Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq152 167 2e-36 seq41 131 1e-25 >seq152 Length=376403 Score = 167 bits (184), Expect = 2e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| |||||||| |||||||| || | || | |||||||| ||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||||||||||||||| || || ||||| ||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||||||||||||| | |||||| ||| || | | ||||||||| Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || || | ||| | |||||||| ||||| || || Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGG 331428 Score = 129 bits (142), Expect = 5e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| || || ||||| | |||||||| || || | | Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || |||||||| ||||||||||| || || || || Sbjct 329527 GACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 329468 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || |||||||| ||||| || || ||||| |||||| || ||| | | || || ||| Sbjct 329467 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAAC 329408 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| || ||||| | ||||| || Sbjct 329407 ATCCAAAAGGAGTCCACACTGCATTTGGT 329379 >seq41 Length=668564 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || ||||| | ||||| || | | Sbjct 25084 ATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCA 25143 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| || | || || ||||||||||||||||||||||| || || || Sbjct 25144 GATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAG 25203 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| || || ||||| || || || | |||||| ||||| | | |||||||| Sbjct 25204 CAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAAT 25263 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||||||||| || || | |||||||| | || ||||| ||||| Sbjct 25264 ATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGG 25310 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| || || | || || || || |||| || |||||||| ||| Sbjct 27143 GATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAG 27202 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | |||| ||| || || ||||||||||| || || || || || Sbjct 27203 CGACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 27262 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || |||||||| || ||| | |||||| ||||||| | | || || || Sbjct 27263 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 27322 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||| || || || || || | ||| | || |||| |||||||||| Sbjct 27323 CATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGG 27370 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || | || || || || || | | | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | | || ||| || || ||||||||||| || || || || || Sbjct 28363 GACACCATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 28422 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| || || ||| | |||||| ||||||| | | || || ||| Sbjct 28423 CAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 28482 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||| | || |||| |||||||||| Sbjct 28483 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTCTGCGCGGAGG 28529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419713927438315