Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq84 98.7 2e-15 seq250 96.9 7e-15 seq161 95.1 2e-14 seq145 95.1 2e-14 seq213 89.7 1e-12 seq393 87.8 4e-12 >seq84 Length=520242 Score = 98.7 bits (108), Expect = 2e-15 Identities = 103/134 (77%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 218657 AGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGA 218716 |||| || ||| || ||||||||||||| || ||||| || ||||| || ||||| | Sbjct 56686 AGGTGGCCCAGCTTGCTGGTTATGTATCAGAGCATTCTGCATATCATCATGGCGAGCAAA 56745 Query 218717 GTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACT 218776 || ||||| | |||| || || | |||||| ||||||| ||||| |||||||| ||| Sbjct 56746 GTTTGCAGAGCACCATCGTTGGACTTGCACAGAACTATGTCGGCAGCAACAACATCAACC 56805 Query 218777 TGCT-GCTCCCCAA 218789 | || | ||||||| Sbjct 56806 TTCTGGTTCCCCAA 56819 >seq250 Length=252733 Score = 96.9 bits (106), Expect = 7e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| || ||||||| || |||||| |||||||||| Sbjct 17024 AGCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAG 17083 Query 142563 CCCCACATCGGGC 142575 ||||| |||||| Sbjct 17084 CCCCATCTCGGGC 17096 >seq161 Length=363946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||| ||||||||||| Sbjct 298838 GCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 298779 Query 142564 CCCACATCGGGC 142575 |||| |||||| Sbjct 298778 CCCATCTCGGGC 298767 >seq145 Length=386019 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||| ||||||||||| Sbjct 120349 GCCCGGGTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCATGGGTTCGAGC 120408 Query 142564 CCCACATCGGGC 142575 |||| |||||| Sbjct 120409 CCCATCTCGGGC 120420 >seq213 Length=298570 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 280152 TCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATC 280211 |||||| ||| || | | |||||||| ||||| || || || || || || | | Sbjct 279158 TCTATGCTTTCAAGGGTCGCCGTCATTGGCCCCAACGGCGCAGGCAAATCGACTTTGGTG 279099 Query 280212 AAAGTCCTGACTGGCGAGACCCAGGC---CACTGAGGG--GTCC-GTTTGGAAGCATCCC 280265 || ||| ||||||||||| || | ||| |||| || |||| | ||| || Sbjct 279098 AAGGTCTTGACTGGCGAGCTAGAGCCTACCACAAAGGGCAGTATTGTTTTCAGGCACCCT 279039 Query 280266 AACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGAC 280325 || |||| | || || || || || || || ||||||||||| || | ||||| ||| Sbjct 279038 AATGTGCGTGTAGCATATGTTGCACAACATGCGTTCCACCACATTGAAGAGCACCTAGAC 278979 Query 280326 ATGACTCCTAACCAATACATTCAGTGGCGCTATGCAAGTGG 280366 | |||||| || ||||| || |||||||| ||||| | ||| Sbjct 278978 AAGACTCCCAATCAATATATCCAGTGGCGGTATGCTACTGG 278938 >seq393 Length=150061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||| | |||||||||||||||||||| | ||||||| || |||||| ||||||||||| Sbjct 144914 GCCCAGGTAGCTCAGTCGGTAGAGCGCAACGCTCTTAACCTTGTGGTCATGGGTTCGAGC 144973 Query 142564 CCCACATCGGGCA 142576 |||| ||||||| Sbjct 144974 CCCATCTCGGGCA 144986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027800571643591