Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq61 109 1e-18 >seq61 Length=579265 Score = 109 bits (120), Expect = 1e-18 Identities = 173/248 (70%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 245189 TTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAG 245248 ||||||| |||||| |||| || || || || |||| |||||| || ||| |||||| Sbjct 233972 TTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTCGTTCCCCGGATGTAA 233913 Query 245249 GCGCCCTTGCCCCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATG 245308 ||| | | || ||| |||||| | || | || || || |||||| ||| Sbjct 233912 CTACCCACAGCTCGGATGTTATGGATGGAAAGCCCAATCCCTCCAGCAGACTTGGAAATG 233853 Query 245309 AGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGC 245368 | ||| || ||| | |||||| || ||||| |||||||| ||||||| | | Sbjct 233852 ACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTGTCATTCTTCATGCAAATC 233793 Query 245369 AGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCG 245428 |||||||||||||||||||| || ||| ||| | |||||| || |||||| ||| Sbjct 233792 AGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTGAAGAGCGTGGGGGATGCG 233733 Query 245429 TGGGTAAA 245436 || || || Sbjct 233732 TGTGTGAA 233725 Score = 107 bits (118), Expect = 4e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 |||||||||||| || ||| |||||||| ||||||| || || || ||||| || Sbjct 235855 GGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACGTGTACTCCACTATTTCAGTGCACAG 235796 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| ||| |||||||||||||| ||| || ||||||||| |||||| | |||||| Sbjct 235795 GTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCATGTGTCCTT 235736 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA 244850 ||| |||||| | || ||||| || | ||| | || |||| Sbjct 235735 GTACAGCATGTACGGGTTTCCGGTTTCCACCTGCGAGAACAGGA 235692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944306726535760