Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq41 109 4e-19 seq152 91.5 1e-13 >seq41 Length=668564 Score = 109 bits (120), Expect = 4e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||||||||||||||||||| ||||||||| ||||| || |||||| Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||| |||||||| |||||||||||||| || ||| Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 27250 ATGCCCTCCTTGTCC 27236 Score = 102 bits (112), Expect = 6e-17 Identities = 113/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| ||||||||||||||||| || ||||||||| ||||| || |||||| Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||| || ||||| |||||||||||||| || ||| Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | || ||| |||||| || ||| ||||| Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAA 28379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | ||| |||||||||||||||||||| ||||||||| || || || |||||| Sbjct 29796 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCC 29737 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || | || |||| ||||| |||||||| |||||||||||||| || Sbjct 29736 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTC 29684 Score = 93.3 bits (102), Expect = 3e-14 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | || ||||| ||||| ||| | || ||||||||| |||||||| |||||| Sbjct 25982 CCTCCACGCAACCGCAACACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCTGCC 25923 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | || |||| ||||||||| ||||| || ||||||||||||||| Sbjct 25922 AAGGTGCGGCCATCCTCCAGTTGCTTGCCTGCAAAAATGAGGCGCTGCTGATCC 25869 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| || |||||||| ||||| || || || Sbjct 30025 ACCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGC 29966 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || | || |||| ||||| |||||||| |||||||||||||| || ||| Sbjct 29965 CAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGG 29906 Query 34020 CACGCTCTCTTTGTCCATAATTTTT 34044 | || || |||||| ||| ||| Sbjct 29905 GATGCCTTCCTTGTCCTGAATCTTT 29881 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| |||| ||| |||||||||||||| || || ||||||||| |||||||| ||||| Sbjct 28302 ACCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGC 28243 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || || | || |||| |||||||| ||||| |||| |||||||| || Sbjct 28242 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTC 28189 >seq152 Length=376403 Score = 91.5 bits (100), Expect = 1e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || ||||||||||| || ||| ||| ||||||||||||||||| || || ||| Sbjct 331665 AGACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCGT 331724 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 | || ||||| ||||| || ||||| |||| |||||||||||| Sbjct 331725 CCATCTTCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCC 331769 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || | ||| |||| |||| ||| || || |||||||| |||||||| || ||| Sbjct 330109 CCACCACGCAGACGCAAAACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCAGCC 330168 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 || || | || ||||| |||||||| |||||||||||||||||||||||| Sbjct 330169 AAGGTACGGCCATCTTCCAACTGCTTGCCCGCAAATATCAGGCGCTGCTGATCC 330222 Score = 84.2 bits (92), Expect = 2e-11 Identities = 83/105 (79%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCA-ATTGTCG 33968 || |||| |||||| || ||||| |||||| ||||||||||| ||||| | | || || Sbjct 330906 AGACGCAACACCAGGTGGAGCGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTG-CG 330964 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | || ||||| ||||| || ||||| |||||||||||||| || Sbjct 330965 GCCATCCTCCAACTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTC 331009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397049087366302