Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq152 111 4e-19 seq41 93.3 1e-13 >seq152 Length=376403 Score = 111 bits (122), Expect = 4e-19 Identities = 87/104 (84%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| || ||||||||||| || |||||||| || || | ||||| |||||||| || Sbjct 332938 CCTTCCTTGTCCTGGATTTTGGCCTTCACGTTATCGATCGTGTCGCTAGATTCTACCTCA 332997 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||||||||||||||| ||||| || || |||||||| Sbjct 332998 AGCGTGATCGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCAT 333041 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 288265 ACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCT 288324 || ||||||| || || || ||||| || || || || ||||| || || || || Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 288325 AATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGG 288384 | ||||| || || || || ||||||||||| ||||| || || || || || Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 288385 ATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTC 288444 || || || |||||||| || || | ||||| || || ||||| | ||| || ||||| Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTA 331625 Query 288445 CCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||||| ||| ||||| || || ||||| Sbjct 331626 CCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 >seq41 Length=668564 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || |||||||| || || || | || || || |||||||| Sbjct 25415 CCTTCCTTATCCTGGATCTTTGCTTTCACATTATCAATCGTGTCACTGGACTCTACTTCA 25356 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || |||||||| || |||||||| ||||| || ||||| Sbjct 25355 AGGGTAATTGTCTTCCCAGTAAGAGTCTTCACGAAAATTTGCAT 25312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179612820500178