Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq213 105 1e-17 >seq213 Length=298570 Score = 105 bits (116), Expect = 1e-17 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 333311 GGTCTCTTTGTCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTC 333370 || |||| ||||||| || | ||||| ||||| |||||||| || ||||| ||| |||| Sbjct 278922 GGCCTCTCTGTCTTCGCCAGTAGCATACCGCCACTGGATATATTGATTGGGAGTCTTGTC 278981 Query 333371 AAGATGATCCTCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGG 333430 || || || || ||||||||||| ||||| ||||| || || || | ||||| ||| || Sbjct 278982 TAGGTGCTCTTCAATGTGGTGGAACGCATGTTGTGCAACATATGCTACACGCACATTAGG 279041 Query 333431 ATGCTTCCAAACA 333443 ||| | ||||| Sbjct 279042 GTGCCTGAAAACA 279054 Score = 91.5 bits (100), Expect = 3e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 334207 CAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACAGACCGTAGCGGT 334266 |||| | |||||||| || || || || || ||||| || |||| |||||| || | Sbjct 281410 CAATTGATCGCATCAGTGTGGACTTTCCACAGCCATTTGGACCGCACAAACCGTAACGCT 281469 Query 334267 TTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCACCATATGCCAGAG 334326 ||||||||||||| ||| ||||| || |||| || || | || ||||| || |||| Sbjct 281470 TTCCACGCTTCAGCACGAAGCGCGTGTTATTCAACAGGATCATGCCTCCATAAGCAAGAG 281529 Query 334327 AAAATTCACAATCACACAGATCCTC 334351 | || || ||| |||| || ||||| Sbjct 281530 AGAACTCGCAAGCACAGAGCTCCTC 281554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102841126581850