Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq61 82.4 9e-11 >seq61 Length=579265 Score = 82.4 bits (90), Expect = 9e-11 Identities = 200/299 (67%), Gaps = 8/299 (3%) Strand=Plus/Minus Query 114962 TACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTT 115021 ||||| || ||| |||| || ||||| ||||| |||| ||| |||| || | ||| || Sbjct 233987 TACCTGGCGGTGTCATTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTC 233928 Query 115022 GTCCCCCGAAT---ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAATACCC 115078 || ||||| || || | | | |||| || | ||||||| | ||||| || Sbjct 233927 GTTCCCCGGATGTAACTACCCACA---GCTCGGATGTTATGGATGGAAAGCCCAATCCCT 233871 Query 115079 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAG 115138 || || |||| || || || |||||| | | || ||||||| || ||||| | Sbjct 233870 CCAGCAGACTTGGAAATGACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTG 233811 Query 115139 TCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTG 115198 ||| ||| | || || |||||| |||| || || | || || ||||||||| Sbjct 233810 TCATTCTTCATGCAAATCAGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTG 233751 Query 115199 AAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCGTAGGTCTCCA 115256 ||||| || || | ||||| ||||| |||| | ||||| | ||| ||||||| Sbjct 233750 AAGAGCGTGGGGGATGCGTGTGTGAAC-CACCTCTCGGACAACAGCCGGTACGTCTCCA 233693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597333058503080