Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq41 140 3e-28 seq152 134 1e-26 seq61 95.1 1e-14 >seq41 Length=668564 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | ||| |||| ||| | ||||| ||||||||||| |||||||| || Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || ||||| ||||| || ||| ||||||| || |||||||| |||||| Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| ||| || | |||||| | || ||| Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACT 25131 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || |||| ||||| || || || ||||| Sbjct 25130 TCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||||| |||||| || || || ||||| || ||||| Sbjct 27370 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCC 27311 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| |||||| | || || ||||||||||| || || Sbjct 27310 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 27251 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || ||| ||| || || | || || | || |||||| Sbjct 27250 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACT 27191 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || || || |||||||| Sbjct 27190 TCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 64234 CACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTC 64293 ||| ||||||| || ||||| || || ||||| || || || | |||||| | || || Sbjct 30007 CACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCCTC 29948 Query 64294 AAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTG 64353 |||||||| |||||| | || || ||||||||||| || || || ||||| || || || Sbjct 29947 CAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTG 29888 Query 64354 TATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTT 64413 || ||| ||| ||| || | || || | || || || || | || | |||||| Sbjct 29887 AATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTT 29828 Query 64414 GCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||| || || || || || ||||| Sbjct 29827 CCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| ||||| | || || || || || |||||||| ||||| Sbjct 28302 ACCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGC 28243 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || ||||||||||| ||| | || | |||||||||||||||||| Sbjct 28242 CAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGG 28183 Query 64336 AATTCCT 64342 ||| ||| Sbjct 28182 AATACCT 28176 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||||| ||||| || || || ||||| || ||||| Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| || ||| | || || ||||||||||| || || Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || ||| ||| || || | || || | | || || Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACC 28350 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || |||| || || || || || ||||| Sbjct 28349 TCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||||| ||||||| |||||| || || || || || || ||||| Sbjct 29796 CCTCCGCGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCC 29737 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | |||||| | || || |||||||| |||||| | || || ||||||||||| || || Sbjct 29736 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29677 Query 64337 ATTCCTTCTTTTT 64349 || ||| | |||| Sbjct 29676 ATGCCTGCATTTT 29664 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || || ||||| ||||| | |||||| | || || ||||||||||| Sbjct 27112 GTCGACTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTGCCC 27053 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 ||| | || ||||||||||||||||||||||| ||| Sbjct 27052 GCAAAGATCAGCCGCTGCTGGTCGGGAGGAATACCT 27017 >seq152 Length=376403 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || ||||| | | || ||||||| ||||| || || || ||||||||||| || Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | || || ||||| ||||||||| |||| || ||||| ||||||||||| Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || ||||| || || ||| || || | || || | || |||||| Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACT 331607 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||| |||||||||||||| || ||||||||||| Sbjct 331608 TCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| | ||| | || || || ||||| ||||| || || || | ||| ||| | || Sbjct 329376 AGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCC 329435 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | |||||| || ||| | || || ||||||||||| ||||| || || || || ||| Sbjct 329436 TCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCT 329495 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| | || || || | ||| | ||| Sbjct 329496 TGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTT 329555 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || |||||||| || || || |||||||| Sbjct 329556 TTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| |||||||||||||| || | ||| || | ||| Sbjct 331671 AGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCGTCCATCT 331730 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCT 64342 || | |||||| || ||| |||| | ||||||||| || || || || ||| Sbjct 331731 TCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCCGGTGGGATCCCT 331781 >seq61 Length=579265 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACTGTATTGCACAATTTCTGCGCAC 154646 || |||| |||||| || || | || || | | |||| | ||| ||||| | |||| Sbjct 235857 GAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACGTGTACTCCACTATTTCAGTGCAC 235798 Query 154647 AAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTCT 154706 | || ||| || |||||||||||||| | ||| || || ||| |||||||| ||| Sbjct 235797 AGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCATGTGTCC 235738 Query 154707 TTGTACAAAATGTACGGGGTGCCCGTTTCCACTTG 154741 ||||||| ||||||||| | || |||||||| || Sbjct 235737 TTGTACAGCATGTACGGGTTTCCGGTTTCCACCTG 235703 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499627618464440