Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq152 132 5e-26 seq41 102 8e-17 seq61 86.0 6e-12 >seq152 Length=376403 Score = 132 bits (146), Expect = 5e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || |||||||||||||| | ||| | | |||||||| || |||||||| || Sbjct 331427 GCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 331486 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || ||||| |||| | | || |||||||||||||| ||||| Sbjct 331487 CAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGG 331546 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | | || | ||||||| | ||||||| Sbjct 331547 GATGCCCTCCTTGTC-TTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCA 331605 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | ||| | || ||||| |||| |||||| |||||||| |||||| Sbjct 331606 CTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | || | || ||||| | | ||||||||||| ||||| ||||| | Sbjct 329361 CCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCC 329420 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| ||||| | || || || | | |||| |||||||| ||||| ||||| Sbjct 329421 AGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGG 329480 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || || || ||| | || | || |||| || | |||||| | ||||| | Sbjct 329481 ATACCCTCCTTATC-TTGAATCTTCGCCTTGACATTG-TCAATGGTGTCACTTGACTCAA 329538 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||||| || |||| ||| || ||||| || |||||| Sbjct 329539 CCTCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 >seq41 Length=668564 Score = 102 bits (112), Expect = 8e-17 Identities = 166/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGT-CGC 138445 ||| ||||||||||| | |||||||| | | ||||| |||||||| ||||| | ||| Sbjct 25311 GCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGC 25252 Query 138446 TCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAG 138505 | | || || ||||| ||||| || || | | | || || || || ||||| |||| Sbjct 25251 T-AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAG 25193 Query 138506 GTATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTC 138563 | ||||| || ||||| ||| | || | || |||| || | || || | ||||| Sbjct 25192 GAATACCCTCCTTGTC-TTGAATCTTGGCCTTCACATTG-TCAATTGTATCTGAAGACTC 25135 Query 138564 CACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 || || | || | || || |||||||| ||||| ||||| |||||||||| Sbjct 25134 AACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATGG 25082 >seq61 Length=579265 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGCACGATCTC 153655 ||||| || ||||| || || || |||||||| || || | || |||||| ||| || || Sbjct 235863 GCAATGGAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACG-TGTACTCCACTATTTC 235805 Query 153656 GGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCA 153715 | ||| |||||| ||| ||| ||||| || ||||| ||| ||||| ||||| Sbjct 235804 AGTGCACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCA 235745 Query 153716 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 153759 | ||| ||| | ||||||||||| ||||| || || |||| Sbjct 235744 TGTGTCCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTGCG 235701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496245334776720