Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq152 95.1 1e-14 seq41 84.2 2e-11 >seq152 Length=376403 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| || || ||||||||||| ||||| || | ||| ||| || Sbjct 329378 CACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTC 329437 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || ||||| || | || | || |||||||| || || || || || |||||||| Sbjct 329438 CAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTG 329497 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || |||| || | |||||| ||||| || || ||||||| ||||| Sbjct 329498 AATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTT 329557 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || | ||| || ||||| |||||||| Sbjct 329558 CCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | ||| || | ||| ||||||||||||||||||||||| || || Sbjct 329586 ATGCCACCACGCAGACGCAAAACCAAATGGAGCGTTGATTCCTTTTGGATATTGTAGTCA 329645 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| |||||||| || || || | ||||| || |||||||||||| Sbjct 329646 GCCAGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAGCGCTGCTGGTCCGGC 329705 Query 45231 GGAATGCCT 45239 ||||||||| Sbjct 329706 GGAATGCCT 329714 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || ||||| || || || ||||| ||||| || ||||| | || ||| Sbjct 331442 CAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATC 331501 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| ||||| || || | || | || || ||||| || || ||||| || || || Sbjct 331502 CTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTC 331561 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 |||||| || || | || | || | ||||||| ||||| ||||| | |||| | Sbjct 331562 TTGAATCTTGGCCTTCA-CGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAG 331620 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCAA 45351 | || ||||| | |||||| |||||||||||||| ||| || || Sbjct 331621 TCTTACCGGTCAAAGTTTTGACAAAAATTTGCATGCCGCCACGAA 331665 >seq41 Length=668564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC-GCTGACGGTTTTAGAATCGTC 45190 |||| |||||| || || || ||||| ||||| ||||| ||| | || ||| || Sbjct 25292 ACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT-AGTGTGCGTCCATCCTC 25234 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | ||| ||||| || | || | ||||||||||| || ||||| || || || ||||| Sbjct 25233 AAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTG 25174 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| || || | || | || || |||||||| ||||| | ||| | || || Sbjct 25173 AATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTT 25114 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| ||||| || ||||| Sbjct 25113 CCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451987656739960