Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq171 86.0 8e-12 seq421 84.2 3e-11 seq202 82.4 9e-11 >seq171 Length=351968 Score = 86.0 bits (94), Expect = 8e-12 Identities = 111/152 (73%), Gaps = 5/152 (3%) Strand=Plus/Minus Query 8161 ACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATACCGATCAGGAAGTGGAA 8220 |||| |||||||| |||| |||||||||||| ||| | || || | | |||| || | Sbjct 71417 ACGGAAAGAAAGTCCCCATTCACGACCCATGCATGGGCACATTCCAAGGAAGAAGGGGCA 71358 Query 8221 GATAACGA----GTTGGAAAGGACCACCGTTG-TAGAGCCACTCATCAAGAGAAGCTGCT 8275 || | | ||||| | ||||| | |||| | ||||| |||| || |||||| ||| Sbjct 71357 AATGATTATTTTGTTGGTAGGGACCCCTGTTGCAAAAGCCATTCATAAACAGAAGCAGCT 71298 Query 8276 TCCCAGATGGGATAGAAGTGGAGACCAATAGC 8307 |||| || || |||||||| ||||| || || Sbjct 71297 TCCCGAATTGGGTAGAAGTGTAGACCGATCGC 71266 >seq421 Length=131632 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 6962 GCTCCGTGGAGCGCCACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCT 7021 ||||||||||| || ||||||| ||| || || ||||| || |||||| || ||| Sbjct 270 GCTCCGTGGAGTGCTACAAAAGTCCAAAGACCACCAAGCTGACACCAGCGTGTAAAGTCT 211 Query 7022 CCCTGAGCTTCTGGACCCCATAGAAGAAGTAGGGAATGTCC 7062 || |||||||| |||||||| |||||||| | ||||| || Sbjct 210 CCTTGAGCTTCAGGACCCCAAAGAAGAAGCAATGAATGGCC 170 >seq202 Length=307796 Score = 82.4 bits (90), Expect = 9e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 7770 TGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGT 7829 ||||||| ||||||||||||||||| |||||||||||||| ||||||||| | || |||| Sbjct 170905 TGTTGAAAGAAGCGTATTGGAAGATTAGACGACCAAAGTAACCGTGAGCAACTACAATGT 170846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622103406683440