Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq152 156 1e-32 seq41 132 1e-25 >seq152 Length=376403 Score = 156 bits (172), Expect = 1e-32 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || |||||||||||||| |||| |||||| ||||||| |||| ||||| ||| Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 ||||| || ||||| || || |||||||| ||||| ||| || || || || ||| Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 ||||| ||||||| |||| |||||| | | || || |||||||| || |||||| Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTA 331625 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || | |||||| ||||||||||| Sbjct 331626 CCGGTCAAAGTTTTGACAAAAATTTG 331651 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||| | || || | || || || ||||||||||||| ||| |||||||||| || Sbjct 329366 TCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGT 329425 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 || ||||| |||| ||||||||| || ||||| |||||||||||||| ||| || || Sbjct 329426 CCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACC 329485 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || || |||||||| ||| || || | |||||| ||| || || || | Sbjct 329486 CTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAG 329545 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || | ||| || ||||| ||||| Sbjct 329546 AGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTG 329584 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || ||||| |||| ||||||||||||||| || | |||||||||| |||| Sbjct 330133 TGGAGTGTTGATTCCTTCTGGATGTTGTAGTCAGCCAAGGTACGGCCATCTTCCAACTGC 330192 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTC 199532 || || || || || || |||||||| |||||| || ||| ||| Sbjct 330193 TTGCCCGCAAATATCAGGCGCTGCTGATCCGGAGGGATCCCTACTC 330238 Score = 91.5 bits (100), Expect = 3e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || |||||||| || ||||||||||| | ||||||||| || | ||| | ||||| ||| Sbjct 330915 ACCAGGTGGAGCGTTGACTCCTTTTGAATGTTGTAGTCTGCAAGAGTGCGGCCATCCTCC 330974 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||||||| || || || || ||||||||||| || Sbjct 330975 AACTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTCAGG 331012 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || | || | ||| |||||||| || | ||||||||| ||||| ||| Sbjct 332442 CGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTC 332501 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | |||||||||||||| || || ||||| || || || || |||||||| Sbjct 332502 CGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGG 332551 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || || |||||||||| ||||||||||||| ||| | |||||||||| ||| Sbjct 329613 TGGAGCGTTGATTCCTTTTGGATATTGTAGTCAGCCAGAGTTCGGCCATCTTCCAATTGC 329672 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || || || || || | |||||||||||||| Sbjct 329673 TTGCCAGCAAAAATCAAGCGCTGCTGGTCCGG 329704 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || || |||||||| ||||| || || | |||||| ||||| || || Sbjct 331662 CGAAGACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAAGGTT 331721 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||||||||| |||||| || || || || | |||||||| ||||| Sbjct 331722 CGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCCGG 331771 >seq41 Length=668564 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || ||||||||||| |||| ||| ||||| |||| || Sbjct 27364 CGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTG 27305 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||| ||||| || ||||||||||| || || || Sbjct 27304 CGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCC 27245 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| | | || || |||| Sbjct 27244 TCCTTGTCCTGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGG 27185 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 27184 GTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTG 27147 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCC 199480 || || || || || || ||||| |||| ||| |||||||||| || | ||||| ||| Sbjct 30006 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCCTCC 29947 Query 199481 AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGA 199540 |||||||| ||||| ||||| || ||||||||||| || || ||||| |||||| Sbjct 29946 AGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 29887 Query 199541 ATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTA 199600 |||||| ||| || |||| |||||| | | || || |||| ||||| ||||| Sbjct 29886 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTC 29827 Query 199601 CCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || Sbjct 29826 CCTGTCAGCGTCTTGACAAAGATCTG 29801 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || ||||||||||| |||| ||| ||||| |||| || Sbjct 28523 CGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTG 28464 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| || || ||||| || ||||||||||| || || || Sbjct 28463 CGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCC 28404 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| | | || || |||| Sbjct 28403 TCCTTGTCCTGGATCTTTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACCTCCAGG 28344 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || ||||| || || Sbjct 28343 GTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTG 28306 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | || ||||||||||| ||||| | ||||| || || | || | |||||| Sbjct 25295 AGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCC 25236 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || |||||||| || || ||||| || |||||||| ||| ||| || || || Sbjct 25235 TCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCT 25176 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| || | || |||| | || || ||||| ||||| ||| Sbjct 25175 TGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTC 25116 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || ||||||||||| || || Sbjct 25115 TTCCCAGTCAGTGTTTTCACAAAGATCTG 25087 Score = 102 bits (112), Expect = 2e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || | |||||| ||||||||||| |||| |||||||| |||| || Sbjct 27137 TCGCAGACGCAGCACCAAGTGGAGTGTCGACTCCTTCTGGATATTGTAGTCTGCCAGGGT 27078 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| || || ||||| || ||||||||||| ||| ||| || Sbjct 27077 GCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATACC 27018 Query 199528 T 199528 | Sbjct 27017 T 27017 Score = 96.9 bits (106), Expect = 8e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| || | ||| || || ||||| || |||||||| |||| ||||||||| |||| || Sbjct 28296 TCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGGGT 28237 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| ||||||||||| || || ||||| | ||||||||||| ||| ||| || Sbjct 28236 GCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGGAATACC 28177 Query 199528 T 199528 | Sbjct 28176 T 28176 Score = 91.5 bits (100), Expect = 3e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || || ||||||||||| |||| || ||||| |||| || Sbjct 29790 CGCAGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCCAGGGTG 29731 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| ||||||||||| ||||| ||||| || ||||||||||| || Sbjct 29730 CGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGG 29681 Score = 89.7 bits (98), Expect = 1e-12 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| |||| ||||||||| ||||| || | ||||| ||||| ||||| || Sbjct 25952 GTCGACTCCTTCTGGATGTTGTAGTCTGCCAAGGTGCGGCCATCCTCCAGTTGCTTGCCT 25893 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGA 199519 || || ||||| |||||||| |||||| Sbjct 25892 GCAAAAATGAGGCGCTGCTGATCCGGA 25866 Score = 86.0 bits (94), Expect = 1e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| ||||| ||||||||||| | ||||||||||| | || Sbjct 26682 CGGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTGTAGTCAGCTAGGGTG 26623 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 | ||||| |||| |||||| || ||||| || || ||||||||||| || Sbjct 26622 CGGCCATCCTCCAACTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGG 26573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178880046329317