Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq41 138 1e-27 seq152 118 1e-21 >seq41 Length=668564 Score = 138 bits (152), Expect = 1e-27 Identities = 171/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || || ||||||||| | || || ||| ||| | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| | || | ||| |||| ||||| ||||| || |||||| |||| Sbjct 27204 GACACCATCGACAACG-TCAAGGCAAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 27261 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || || || |||||||| || | |||||||| ||||| | Sbjct 27262 AGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATA 27321 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| ||||||| ||| ||||||||||| || | || || Sbjct 27322 ACATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGG 27370 Score = 132 bits (146), Expect = 5e-26 Identities = 170/229 (74%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || || || ||||| ||| | || |||||| | | | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| |||| | ||| |||| ||||| ||||| || |||||| |||| Sbjct 28363 GACACCATCGACAACG-TTAAGGCAAAGATCCAGGACAAGGAGGGCAT-CCCGCCAGACC 28420 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | ||||| || |||||||| || | |||||||| ||||| | Sbjct 28421 AGCAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATA 28480 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| |||| || ||| ||||||||||| || | || || Sbjct 28481 ACATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTCTGCGCGGAGG 28529 Score = 104 bits (114), Expect = 2e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| ||||||| |||||||| || | |||||||| |||||||| || | ||| Sbjct 27018 GGTATTCCTCCCGACCAGCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 27077 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||| ||||| ||||| |||| || || |||||||||||| || || Sbjct 27078 ACCCTGGCAGACTACAATATCCAGAAGGAGTCGACACTCCACTTGGTGCTGCGTCTGCGA 27137 Query 38466 GGCGG 38470 || || Sbjct 27138 GGTGG 27142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| ||||||| |||||| | || | |||||||| |||||||| || | ||| Sbjct 28177 GGTATTCCTCCCGACCAGCAGCGGTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 28236 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGA 38465 ||||| |||||||||||||| ||||| | || || ||| |||||||||| || || Sbjct 28237 ACCCTGGCAGACTACAACATCCAGAAGGAGTCAACACTCCATCTGGTGCTGCGCCTGCGA 28296 Query 38466 GGCGG 38470 || || Sbjct 28297 GGTGG 28301 Score = 89.7 bits (98), Expect = 5e-13 Identities = 86/109 (79%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| || ||||| |||||||| |||| ||| ||||| ||| |||| || | ||||||| Sbjct 26568 TCCCACCAGACCAGCAGCGGCTGATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGCACCC 26627 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | |||||||| || |||||||| | || ||||| ||||||||||| Sbjct 26628 TAGCTGACTACAATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTGCG 26676 Score = 86.0 bits (94), Expect = 6e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 38351 TCCCGCCG-ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||| | || ||||| ||||||| || ||||| || ||||| || | |||||| Sbjct 25862 TCCCTCCGGATCAGCAGCGCCTCATTTTTGCAGGCAAGCAACTGGAGGATGGCCGCACCT 25921 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | |||||||||||||| ||||| |||| ||||||||||| |||| ||| | || | Sbjct 25922 TGGCAGACTACAACATCCAGAAGGAGTCGACCTTGCATTTGGTGTTGCGGTTGCGTGGAG 25981 Query 38470 GC 38471 || Sbjct 25982 GC 25983 Score = 84.2 bits (92), Expect = 2e-11 Identities = 92/121 (76%), Gaps = 1/121 (1%) Strand=Plus/Plus Query 38351 TCCCGCC-GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 ||||||| ||||| ||||| || || | || || || |||||||| || | ||||||| Sbjct 29676 TCCCGCCAGACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCC 29735 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCG 38469 | ||||| || ||||| ||||| ||||||| ||| ||||||||||| || | || | Sbjct 29736 TGGCAGACTATAATATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAG 29795 Query 38470 G 38470 | Sbjct 29796 G 29796 >seq152 Length=376403 Score = 118 bits (130), Expect = 1e-21 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| | || || || || || || | || || ||| ||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | ||||| ||||| || || ||||||| Sbjct 331594 GACACCATCGATAACG-TGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCA 331536 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || |||| || |||||||||||||| || | || || || || ||||| Sbjct 331535 ACAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAA 331476 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| || ||| |||| |||||||| | || ||| Sbjct 331475 CATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGGC 331427 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || || |||||||| || | || || ||| | | Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || || | || || ||||| || || | ||||| Sbjct 329527 GACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 329468 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || ||| |||| || | ||| ||||| ||||| ||| Sbjct 329467 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAAC 329408 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||||||| | || |||||||||||||| || Sbjct 329407 ATCCAAAAGGAGTCCACACTGCATTTGGTGCTCCG 329373 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 38346 GGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGC 38405 || ||||| | |||||||| || || |||| ||| || ||||||||||| || | || Sbjct 332560 GGGATTCCACCGGACCAACAACGCCTGATTTTCGCTGGTAAACAGCTGGAAGATGGCCGG 332501 Query 38406 ACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||| | |||||||||||| || ||||| | || | |||||||||||||| Sbjct 332500 ACCTTGGCCGACTACAACATTCAGAAGGAGTCAACTTTACATTTGGTGCTGCG 332448 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500155600307840