Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq188 95.1 2e-14 seq126 95.1 2e-14 seq240 84.2 3e-11 >seq188 Length=330512 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 15956 AATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTC 16015 || |||| | | || || || ||||||||||| |||| | |||||| || || || || Sbjct 30666 AACACCTTTGTTGTCCTCGAACCCATCCATCTCAGTCAGCAACTGGTTGATGGTCTGCTC 30725 Query 16016 CCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATC 16073 ||| |||||||| || | | ||| ||||||| ||| || ||| || ||||||||| Sbjct 30726 CCGCTCATCATTGCCT--CCTCCCATGCCAGCACCGCGCTGACGTCCGACAGCATCAATC 30783 Query 16074 TCATCAATGAAGACGATGCATGG 16096 ||||||||||| || ||||| || Sbjct 30784 TCATCAATGAAAACAATGCAGGG 30806 >seq126 Length=422855 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||||||| | |||| |||||| |||||||| |||||||||| |||||| ||||||||| Sbjct 387364 CTTCTGCTCAATTTTTTGGCTGAAGAAGCGTGGTCTCATGCATGGTCTCACCTTCTCCAA 387423 Query 102290 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| | || || || |||||||| || ||| || ||||| Sbjct 387424 CGAGTTGATATCGCGGGACGAGGGCCTTCACTGCGATTTTGC 387465 >seq240 Length=262824 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| | ||| |||||||| || || || |||| ||||||||| | || Sbjct 26574 AAGCCATCCATCTCGGACAACAGCTGGTTGATGGTCTGCTCCCTCTCATCATTCCC--GC 26517 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 ||| |||| | || ||| || || |||||||||||||| |||||||| |||| Sbjct 26516 CCCCCATGCCAGTTCCCCGCTGCCGGCCAACAGCATCAATCTCATCGATGAAGACTATGC 26457 Query 16093 ATGG 16096 |||| Sbjct 26456 ATGG 26453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620721054220720