Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq381 89.7 6e-13 seq40 84.2 3e-11 seq2 84.2 3e-11 >seq381 Length=154302 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 |||||||| ||||| || || || || |||| ||| | ||| ||| | | ||| || || Sbjct 30302 CGATCGAAGCGACCAGGTCGTAGGAGTGCATTATCCAAAATGTCGGCCCTGTTGGTGGCT 30243 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | ||| | || || || | || || |||||||||||||| || ||||||||| Sbjct 30242 GCGACGACAATGATACCTGTGTTGCCCTCAAAGCCGTCCATTTCTGTCAGCAGCTGGTTG 30183 Query 11623 ATCGTCTGTTCACGCTCATCGTTG 11646 | ||||| || | |||||||||| Sbjct 30182 AGAGTCTGCTCCCTCTCATCGTTG 30159 >seq40 Length=674714 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 226509 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGAGACC 226454 >seq2 Length=1355118 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| ||||||||||||||| |||||||| || Sbjct 747693 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCATCGGTTCGAGACC 747638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588955746587800