Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq171 89.7 6e-13 seq202 86.0 7e-12 >seq171 Length=351968 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/152 (74%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 163998 GCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATGGC-TTTA 164056 || || ||||| ||||||||||| ||| ||||||| || || || ||||||||| ||| Sbjct 71266 GCGATCGGTCTACACTTCTACCCAATTCGGGAAGCTGCTTCTGTTTATGAATGGCTTTTG 71325 Query 164057 CAACGGTGGTCCTTTCCAAC----TTGTCGTCTTCCACTTCCTGATCGGTATCTATGCAT 164112 |||| | ||||| | ||||| | || | | || |||| | | || || | ||| Sbjct 71326 CAACAGGGGTCCCTACCAACAAAATAATCATTTGCCCCTTCTTCCTTGGAATGTGCCCAT 71385 Query 164113 ACATGGGTCGTGAGTGGGAACTGTCTTACCGT 164144 |||||||||||| |||| ||| |||| |||| Sbjct 71386 GCATGGGTCGTGAATGGGGACTTTCTTTCCGT 71417 >seq202 Length=307796 Score = 86.0 bits (94), Expect = 7e-12 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 164476 ACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACA 164535 ||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 170846 ACATTGTAGTTGCTCACGGTTACTTTGGTCGTCTAATCTTCCAATACGCTTCTTTCAACA 170905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556905648748440