Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq152 158 3e-33 seq41 141 2e-28 >seq152 Length=376403 Score = 158 bits (174), Expect = 3e-33 Identities = 165/215 (77%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 |||||| || |||||||| ||||| || || || |||||||| || || || | ||||| Sbjct 331442 CAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATC 331501 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| Sbjct 331502 CTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTC 331561 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGT--CCGAACTTTCCACTTCAAGGGTAACC 195105 |||||| || ||| ||||| || ||||||| | | || |||||||| | |||| Sbjct 331562 TTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGAC--TCCACTTCCAACGTAATA 331619 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||||||||| || || | |||||| Sbjct 331620 GTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 138 bits (152), Expect = 3e-27 Identities = 155/206 (75%), Gaps = 6/206 (3%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || |||||||| ||||| || || || || || || || | |||||| || | |||| Sbjct 329385 TGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTCCAACTGC 329444 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || |||||||| || || ||||| ||||| || || || || |||||||| || Sbjct 329445 TTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGAATCTTC 329504 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||| || ||||||||||| |||| || || ||||| |||| || || ||| Sbjct 329505 GCCTTGACATTGTCAATGGTGTC---ACTTGACTCAACCTCAAGAGTAATGGTTTTCCCT 329561 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 |||||||| || || || | |||||| Sbjct 329562 GTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 86.0 bits (94), Expect = 1e-11 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 194943 AGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACC 195002 ||| ||||| || ||||| ||||| ||||| | || | |||||||| ||||| ||||| Sbjct 332465 AGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTCCGGCCATCTTCCAGCTGTTTACC 332524 Query 195003 TGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||||| || || ||||||||||| || ||||| ||| Sbjct 332525 AGCGAAAATCAGGCGTTGTTGGTCCGGTGGAATCCCT 332561 >seq41 Length=668564 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| ||||||||||||||||||||||| || || || | ||||| || || ||| Sbjct 25286 TGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCCTCAAGTTGC 25227 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || || || || ||||| |||||||||||||| || || ||||||||||| || Sbjct 25226 TTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTG 25167 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || ||||| || || ||| || ||||| | || | ||||| || ||| Sbjct 25166 GCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTCCCAGTC 25107 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | ||||| Sbjct 25106 AGTGTTTTCACAAAGATCTGCAT 25084 Score = 91.5 bits (100), Expect = 3e-13 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||||||||| |||||||||||||| || || || || | ||||| || | ||| Sbjct 26665 GTGCAGAGTGGACTCCTTTTGAATATTGTAGTCAGCTAGGGTGCGGCCATCCTCCAACTG 26606 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 ||| || ||||| || || || || |||||||| || |||||| Sbjct 26605 CTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGTGGGATGCCT 26563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109442493894017