Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq41 127 1e-24 seq152 107 1e-18 >seq41 Length=668564 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | ||| |||| |||| || ||| ||||| ||||||||||| | Sbjct 30024 CCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCC 29965 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| |||||||| || |||||||| || || || ||||||||| |||| Sbjct 29964 AGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 29905 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | || |||||||| |||||| ||||| || | ||||| || | || ||| Sbjct 29904 ATGCCTTCCTTGTCCTGAATCTTTGCCTTGAC--AT--TGTCGATGGTGTCGCTGGACTC 29849 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | ||| ||||| || || || || ||||| |||||||||||||| Sbjct 29848 GACCTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| | || |||| |||||||| || |||||||| Sbjct 27334 TCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAG 27275 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| ||||| |||||| Sbjct 27274 ATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTG 27215 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || || | ||| ||||| || || || || ||||| ||| Sbjct 27214 TCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGGTCTTCCCTGTCAGGGTCTTGACA 27155 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 27154 AAGATTTGCAT 27144 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| | || |||| |||||||| || || ||||| Sbjct 28493 TCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAG 28434 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | ||||||||||| ||||| || ||| Sbjct 28433 ATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTTAACGTTG 28374 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | | ||| || || | ||| ||||| || || || || ||||| ||| Sbjct 28373 TCGATGGTGTCGCTCGACTCGACCTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACA 28314 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 28313 AAGATCTGCATA 28302 >seq152 Length=376403 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| || | |||| || || || ||||||||||| | ||| | || |||| ||| Sbjct 329379 ACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTCC 329438 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||| ||||| ||||| || || || |||||||| | || | |||||||| || | Sbjct 329439 AACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 329498 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 |||||| ||||| | || | |||| | |||||| || | || |||||||| Sbjct 329499 ATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTTC 329558 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | |||||| |||||||| ||||| Sbjct 329559 CCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/231 (68%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | |||||||| |||| || || ||||| ||||| || || | Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| ||||||||||| |||||||| || || || || ||||| | || Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||||||||| |||||| || || | ||||||| || | || ||| Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCAC----GTTATCGATGGTGTCGCTGGACTC 331603 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || | || || || || || || | ||| || ||||| || ||||| Sbjct 331604 CACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324622715745528