Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq41 107 2e-17 seq152 91.5 1e-12 seq22 91.5 1e-12 >seq41 Length=668564 Score = 107 bits (118), Expect = 2e-17 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 563259 ACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||| || || | ||| || || ||| | |||| |||||||||||| ||||| || | | Sbjct 25299 ACGAAGGACTAAATGCAGAGTCGACTCTTTTTG--AATATTGTAATCCGCTAGTGTGCGT 25242 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||| |||||||| ||||| |||||||| || | |||||| || |||||||| || || Sbjct 25241 CCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCC 25182 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAGT 563435 || |||||||| || || || ||||||||||| | || | | ||| | ||| Sbjct 25181 TTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTG-AAGACTCAACTTCCAAAGT 25123 Query 563436 AACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || ||||| || ||||| || || || ||||| Sbjct 25122 GATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 >seq152 Length=376403 Score = 91.5 bits (100), Expect = 1e-12 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| | ||| || ||||||||||| || || | ||| | Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGG--ATGTTGTAATCAGCCAGCGTCCGGCCATCCT 331503 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | || ||||| |||||||||||||| | || || || ||||| || || || || |||| Sbjct 331504 CCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTT 331563 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTT 563442 |||| || || || || || || || || || | || ||| | |||| ||| Sbjct 331564 GAATCTTGGCCTTCACGTTATCGATGGTGTCGCTG-GACTCCACTTCCAACGTAATAGTC 331622 Query 563443 TTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| || | |||||| || ||||||||||| Sbjct 331623 TTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 >seq22 Length=829945 Score = 91.5 bits (100), Expect = 1e-12 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 || ||| || || || | |||||||||||| || || ||||| | | ||||| Sbjct 652197 AGTTATTGGCATTGACCTCGGAACCACATATTCCTGCGTCGGTGTCTACAAGAATGGCCG 652256 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 ||| || ||||| || || |||||||| || | | |||||| ||||||||| | || || Sbjct 652257 AGTAGAGATTATCGCGAACGATCAAGGCAATCGGATTACTCCGTCTTATGTTGCCTTTAC 652316 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAA 550170 || ||||| | | | | |||||||| || ||| |||| || || |||||| | Sbjct 652317 AGATACTGAGCGTCTTATAGGTGATGCCGCGAAAAATCAGGCTACAACAAATCCTGACCG 652376 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGG 550200 || || | ||||| ||||| | ||||| Sbjct 652377 CACCATCTATGATGTCAAACGCCTTATTGG 652406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029150514712990