Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq297 105 5e-18 >seq297 Length=204439 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 30008 TGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGA 30067 ||||||| || ||||| ||||||| |||||| |||||||||||| | || | Sbjct 30285 TGTGGCAGGGCGGAAGGGCCATGATAGGCAAGTCAGAGGGGTTCCAGGCCGTGAGGACGT 30226 Query 30068 TGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCC 30127 ||| | |||| || | ||| |||| | | | | | ||| ||||||||||| Sbjct 30225 GGCGGCGCCCTTCCGGATCCTTCTTGATCTGCTGTATGAGCTGCCGCAACTGATCCACCC 30166 Query 30128 CCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGA 30187 | ||| |||||| || |||||| |||||| |||||||| |||| |||||| | Sbjct 30165 CTTGCCCACTGTAGTCGGCGTGCATGTCGCTGTACTTGGCTCCGAAGTGCCGCCACTGAA 30106 Query 30188 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30223 | |||||||| || |||||||| ||||||||||| Sbjct 30105 AGCCGTACACGGGCCCCAGGTCCATCTCTTCCCTGT 30070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408603899945723