Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq41 122 7e-23 seq152 113 4e-20 >seq41 Length=668564 Score = 122 bits (134), Expect = 7e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||||| ||||| | |||||||| || || || |||||||| ||||||||||| || Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| || | |||||| || ||||| || | || || || || || ||| Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || |||||||| || || ||| | || | || || || | || ||| Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACT 25131 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | ||||| || || || || | ||||| ||||| ||||||||||| Sbjct 25130 TCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATGGT 25081 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 101255 CGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCA 101314 || || || | ||||||||||||||| || || || || || || || | || | | || Sbjct 30012 CGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCA 29953 Query 101315 TCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTA 101374 || |||| ||||| || ||||| |||| ||||| || || ||||| |||||||| || Sbjct 29952 TCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTG 29893 Query 101375 TCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACC 101434 || ||||| ||| || ||| | || | ||||| | || || || || |||| Sbjct 29892 TCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATG 29833 Query 101435 GTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTACGCGAAGA 101482 || || || || | || || ||||| |||||||| | |||| ||| Sbjct 29832 GTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCATCCCTCCGCGCAGA 29785 >seq152 Length=376403 Score = 113 bits (124), Expect = 4e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| ||||| ||||| || || ||||| ||||| |||||||| || || | ||||| | | Sbjct 329600 ACGCAAAACCAAATGGAGCGTTGATTCCTTTTGGATATTGTAGTCAGCCAGAGTTCGGCC 329659 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCT 101368 ||| ||||||||||| || ||||| ||||| ||||| || || |||||||||||| Sbjct 329660 ATCTTCCAATTGCTTGCCAGCAAAAATCAAGCGCTGCTGGTCCGGCGGAATGCCT 329714 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||| || || || || ||||| || || || || || | || | |||| ||| Sbjct 329379 ACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTCC 329438 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || ||||| || | |||||| || || || || || || || ||||||||| Sbjct 329439 AACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGA 329498 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||| | || || |||||||| | ||||| Sbjct 329499 ATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTTC 329558 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || ||||| || ||||| || |||||| Sbjct 329559 CCTGTCAAAGTCTTGACAAAGATTTGCATG 329588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265113652107