Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq41 96.9 3e-15 seq152 95.1 9e-15 >seq41 Length=668564 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 || ||||| || || ||||||||||||||||||||| | ||| | || | || || Sbjct 25292 ACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCCTCA 25233 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| || || || || || || | |||| ||||||||||| | Sbjct 25232 AGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGA 25173 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| | ||| || |||| || || || || Sbjct 25172 ATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTC 25113 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || |||| ||||| ||||| |||||||| ||| Sbjct 25112 CCAGTCAGTGTTTTCACAAAGATCTGCATGGTG 25080 Score = 86.0 bits (94), Expect = 5e-12 Identities = 93/122 (76%), Gaps = 1/122 (1%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| |||| || |||| |||||| || || ||| ||| |||||||||||||| |||| Sbjct 26689 GCCACCCCGGAGGCGCAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTGTAGTCAGC 26630 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGG 48657 ||| | || | || ||||||||||| || || || ||||| ||||| || || |||| Sbjct 26629 TAGGGTGCGGCCATCCTCCAACTGCTTGCCAGCGAAAATCAGCCGCTGCTGGTCTGGTGG 26570 Query 48658 GA 48659 || Sbjct 26569 GA 26568 >seq152 Length=376403 Score = 95.1 bits (104), Expect = 9e-15 Identities = 95/122 (78%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | || || | ||||| ||| || ||| |||||| ||||| |||||||||| Sbjct 331655 GCCGCCACGAAGACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGC 331714 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCC-GTGG 48657 || |||| | || |||||||||||||| ||||| |||| ||||| |||||| |||| Sbjct 331715 TAAGGTTCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCCGGTGG 331774 Query 48658 GA 48659 || Sbjct 331775 GA 331776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924827995573