Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq421 89.7 5e-13 seq171 87.8 2e-12 >seq421 Length=131632 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 10025 ATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGAGATTTCGTCCGCTGG 10084 ||||| ||||| | ||||| |||||||||||||| |||| ||||| || |||||| Sbjct 167 ATGGGCCATTCATTGCTTCTTCTTTGGGGTCCTGAAGCTCAAGGAGACTTTACACGCTGG 226 Query 10085 ATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGC 10128 |||||||| || || ||| ||||||| || ||||||||||| Sbjct 227 TGTCAGCTTGGTGGTCTTTGGACTTTTGTAGCACTCCACGGAGC 270 >seq171 Length=351968 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/151 (74%), Gaps = 5/151 (3%) Strand=Plus/Plus Query 8461 GCAATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGC-TCTA 8519 || || || || ||||||||||| || ||||||| |||||| || |||| |||| | | Sbjct 71266 GCGATCGGTCTACACTTCTACCCAATTCGGGAAGCTGCTTCTGTTTATGAATGGCTTTTG 71325 Query 8520 CAACGGTGGTCCTTACCAGC----TTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTT 8575 |||| | ||||| ||||| | | | ||| || |||| ||||||| | | | | Sbjct 71326 CAACAGGGGTCCCTACCAACAAAATAATCATTTGCCCCTTCTTCCTTGGAATGTGCCCAT 71385 Query 8576 ATATGGGTCGTGAATGGGAACTTTCTTACCG 8606 |||||||||||||||| |||||||| ||| Sbjct 71386 GCATGGGTCGTGAATGGGGACTTTCTTTCCG 71416 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516462239544000