Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq152 111 1e-18 seq41 105 4e-17 >seq152 Length=376403 Score = 111 bits (122), Expect = 1e-18 Identities = 160/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGT--ACTTTCTTTAGAAACATTATAATCAGCTAGAG 480609 ||||| ||||| || | ||| ||||| ||| ||| || ||||| ||||| || | Sbjct 329367 CGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATG--TTATAGTCAGCCAGGG 329424 Query 480610 TTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTC 480669 | | ||| || | |||||||||||||| |||||||| || || |||||||| || | Sbjct 329425 TCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATAC 329484 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA-GTGTGTGAAGTTTCA 480728 | ||||| ||||||||||| |||||| ||||| || ||| || | || ||| Sbjct 329485 CCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAA-CCTCA 329543 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| || || | |||||| || || ||||| Sbjct 329544 AGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTG 329584 Score = 96.9 bits (106), Expect = 2e-14 Identities = 129/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || |||||||| || || | | ||| || || || || || |||||||||||||| ||| Sbjct 331476 TTGTAATCAGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGT 331535 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || ||||| || || ||||||||||||||||| || || || || || || Sbjct 331536 TGGTCGGGAGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCG 331595 Query 480714 GT-GTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | | | | || ||| |||||||| |||||||| | ||| || || |||||||| Sbjct 331596 CTGGACTCCACTTCCAA-CGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTG 331651 >seq41 Length=668564 Score = 105 bits (116), Expect = 4e-17 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 480582 TCTTTAGAAACATTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAA 480641 ||||| || ||| ||||| ||||| || | ||| ||||||||||||||||||||| Sbjct 25274 TCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAA 25215 Query 480642 ATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCT 480701 || || ||||| || || |||||||| || ||||||||||||||||| || ||| Sbjct 25214 ATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTG 25155 Query 480702 TCAATAGTATC 480712 ||||| ||||| Sbjct 25154 TCAATTGTATC 25144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268061196262148