Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq171 82.4 2e-11 >seq171 Length=351968 Score = 82.4 bits (90), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 5/143 (3%) Strand=Plus/Minus Query 22103 AAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGA- 22161 |||| |||| || || |||||| | | | | |||| || |||| || | | | | | Sbjct 71408 AAGTCCCCATTCACGACCCATGCATGGGCACATTCCAAGGAAGAAGGGGCAAATGATTAT 71349 Query 22162 ---GTTGGAATGGACCGCCGTTGTACA-GCCATTCATCAAGTGTAGCAGCTTCCCAAATT 22217 ||||| | ||||| | |||| | | ||||||||| || | ||||||||||| |||| Sbjct 71348 TTTGTTGGTAGGGACCCCTGTTGCAAAAGCCATTCATAAACAGAAGCAGCTTCCCGAATT 71289 Query 22218 GGGTAGAAGTGTAGTCCGATGGC 22240 |||||||||||||| ||||| || Sbjct 71288 GGGTAGAAGTGTAGACCGATCGC 71266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146203223658780