Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq41 190 3e-43 seq152 176 6e-39 seq127 127 3e-24 seq22 123 3e-23 seq183 107 3e-18 >seq41 Length=668564 Score = 190 bits (210), Expect = 3e-43 Identities = 164/203 (81%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||||||||| || ||||| || || ||||| | || |||||||| ||| Sbjct 25084 ATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCA 25143 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | || |||||||||||||| ||||| || ||||| || || ||| Sbjct 25144 GATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAG 25203 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 ||||| || ||||||||||| || || ||||| |||||||| || || || |||||||| Sbjct 25204 CAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAAT 25263 Query 172042 GTTCAAAAGGAGTCTACTCTACA 172064 ||||||| ||||| ||||| || Sbjct 25264 ATTCAAAAAGAGTCGACTCTGCA 25286 Score = 156 bits (172), Expect = 6e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || || || || || || || |||||||| ||||| ||||| Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| || |||||||| || ||||||||||| || || || ||| Sbjct 29858 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 29917 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || ||||| ||||| || ||| Sbjct 29918 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAAC 29977 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGT 172070 | || ||||| ||||| || || || || Sbjct 29978 ATCCAGAAGGAATCTACCCTTCATCTGGT 30006 Score = 152 bits (168), Expect = 7e-32 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || ||||| || || || || |||||||| || || ||||| Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| || || ||||| ||||| || || || ||| Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 27263 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || ||||| || || ||||| || ||||| || ||||| || || || ||| Sbjct 27264 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 27323 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCT 172073 | || |||||||| || || || || || || Sbjct 27324 ATCCAGAAGGAGTCGACGCTTCATCTGGTGCT 27355 Score = 107 bits (118), Expect = 3e-18 Identities = 104/133 (78%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 |||||| ||||| || ||||| || || ||||| ||||| || ||| | || ||||| || Sbjct 26563 AGGCATCCCACCAGACCAGCAGCGGCTGATTTTCGCTGGCAAGCAGTTGGAGGATGGCCG 26622 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 ||||| ||||| ||||| ||||||||||||| ||||| ||| | || || | || || Sbjct 26623 CACCCTAGCTGACTACAATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCCG 26682 Query 172083 GGGTGG--TGCAA 172093 |||||| ||||| Sbjct 26683 GGGTGGCATGCAA 26695 Score = 98.7 bits (108), Expect = 1e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| ||||| ||||||||||||||||| || | |||||||||||| Sbjct 25984 ATGCAGATTTTTGTCAAAACTCTTACTGGAAAAACTATTACTTTGGAGGTTGAGTCGAGC 26043 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || || | ||||| |||||||| || |||||||| Sbjct 26044 GACACGATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAAGG 26087 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || ||||| || |||||||| || || || ||||| || || ||||| Sbjct 25312 ATGCAAATTTTCGTGAAGACTCTTACTGGGAAGACAATTACCCTTGAAGTAGAGTCCAGT 25371 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || ||||| | ||||| ||||| || ||||||||||| Sbjct 25372 GACACGATTGATAATGTGAAAGCAAAGATCCAGGATAAGGAAGG 25415 Score = 84.2 bits (92), Expect = 3e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| |||||||| || ||||| || || || || ||||| | ||||| ||||| Sbjct 27372 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATCACATTGGAGGTGGAGTCCAGC 27431 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGG 171965 ||||| || || ||| |||| || |||||||| ||||||||||| Sbjct 27432 GACACCATTGACAACGTCAAGGCAAAGATTCAGGATAAGGAAGG 27475 >seq152 Length=376403 Score = 176 bits (194), Expect = 6e-39 Identities = 165/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | || || || ||||| || | || || ||||| Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||||||| | || |||||||||||||| ||||| ||||| || ||||| || Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||||||||| || |||||||| || ||||| || || || |||||||||||| Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTT 172071 | || |||||||| ||||| || || ||| Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTT 331445 Score = 172 bits (190), Expect = 7e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| || || | || || ||||| || || || ||||||||||| Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || |||| || ||||||||||||||||| || || || || || ||| Sbjct 329527 GACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 329468 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || ||||| |||||||| || ||| | || ||||| || ||||| ||||| || ||| Sbjct 329467 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAAC 329408 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGTGC 172091 | ||||||||||| || || || | || || | ||||| |||||||| Sbjct 329407 ATCCAAAAGGAGTCCACACTGCATTTGGTGCTCCGCCTTCGAGGTGGTGC 329358 Score = 113 bits (124), Expect = 6e-20 Identities = 107/136 (79%), Gaps = 2/136 (1%) Strand=Plus/Minus Query 171960 GGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGG 172019 || ||| || ||||| |||||||| || | |||||||||||||| ||| | |||||||| Sbjct 331784 GGTAGGGATCCCACCGGATCAGCAGCGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGG 331725 Query 172020 ACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCT 172079 ||| ||| | |||||||||||| |||| || ||||| ||||| || || || || | || Sbjct 331724 ACGAACCTTAGCTGATTACAACATTCAGAAAGAGTCCACTCTCCATCTGGTGCTCCGTCT 331665 Query 172080 TCGGGGTGG--TGCAA 172093 ||| || || ||||| Sbjct 331664 TCGTGGCGGCATGCAA 331649 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| |||||||| || || ||||| || ||||| |||||||||||||| |||||||| || Sbjct 332561 AGGGATTCCACCGGACCAACAACGCCTGATTTTCGCTGGTAAACAGCTGGAAGATGGCCG 332502 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 ||| | || || |||||| |||| |||||||| ||| |||| | || || | ||||| Sbjct 332501 GACCTTGGCCGACTACAACATTCAGAAGGAGTCAACTTTACATTTGGTGCTGCGCCTTCG 332442 Query 172083 GGGTGG 172088 ||||| Sbjct 332441 TGGTGG 332436 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| || || || || ||||| || || ||||||||||| || ||| | || ||||| || Sbjct 331022 AGGTATCCCCCCTGACCAGCAGCGCCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGCCG 330963 Query 172023 TACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCG 172082 || || || || |||||| ||||||||||||| || || ||||| || | | || || Sbjct 330962 CACTCTTGCAGACTACAACATTCAAAAGGAGTCAACGCTCCACCTGGTGTTGCGTCTCCG 330903 Query 172083 GGGTGG 172088 ||||| Sbjct 330902 TGGTGG 330897 >seq127 Length=421896 Score = 127 bits (140), Expect = 3e-24 Identities = 163/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 196016 GAGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTT 196075 |||||| || ||||||||||| || || || | ||||| | ||| ||||||| || Sbjct 174732 GAGTTCAAACGGAAGAATAAGAAGGACATGTCAGCTAATCCCCGTGCTGTTCGTCGTCTC 174673 Query 196076 AGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAG 196135 | || |||||||| |||||||| || || ||| |||| | || || || | | ||||| Sbjct 174672 CGAACGGCATGTGAGCGTGCCAAGCGCACCCTCAGTTCTTCTGCCCAGACGACGATTGAG 174613 Query 196136 ATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAA 196195 ||||| |||| || || ||||| |||||| | || | || ||||| || || || Sbjct 174612 ATTGACAGTTTGTACGAGGGTATTGATTTCTATTCCACACTGACACGTGCTCGATTCGAG 174553 Query 196196 GAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAA 196240 ||| | ||| ||| |||| ||||||| ||||| ||||| ||| Sbjct 174552 GAGCTCAACATGGATCTGTTCCGGAAGTGCATGGACCCTGTGGAA 174508 >seq22 Length=829945 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 195298 AGCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCG 195357 || |||||| || || | ||||| || || || || || ||||| | | |||| || Sbjct 652197 AGTTATTGGCATTGACCTCGGAACCACATATTCCTGCGTCGGTGTCTACAAGAATGGCCG 652256 Query 195358 TGTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTAC 195417 |||||||||||| |||| || ||||| || || | ||||| || || ||||||||||| Sbjct 652257 AGTAGAGATTATCGCGAACGATCAAGGCAATCGGATTACTCCGTCTTATGTTGCCTTTAC 652316 Query 195418 AGATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAA 195477 ||||| ||| ||||| | || |||||||| ||||||||| | | | || ||| | Sbjct 652317 AGATACTGAGCGTCTTATAGGTGATGCCGCGAAAAATCAGGCTACAACAAATCCTGACCG 652376 Query 195478 TACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGT 195515 || ||| ||| | || || |||||||| || |||| Sbjct 652377 CACCATCTATGATGTCAAACGCCTTATTGGCCGAAAGT 652414 >seq183 Length=335858 Score = 107 bits (118), Expect = 3e-18 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 195800 ATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA------CAAG 195853 || ||||| || ||||| || ||||||||||| || || |||||||||| | Sbjct 252184 ATCATCAACGAGCCAACTGCCGCTGCAATTGCATACGGCTTGGACAAGAAGTCCTCCTCA 252125 Query 195854 GACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTT 195913 | | || | || || | ||||| ||| | |||||||||||||| ||||| || || Sbjct 252124 GTTGGGGAGAGCAACGTCCTCATCTTCGATTTGGGTGGTGGTACGTTCGATGTGTCCCTG 252065 Query 195914 CTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 || | ||||||| || || ||||| || |||||||| |||||||| || ||||| || Sbjct 252064 CTGACAATTGAAGAGGGCATTTTCGAGGTGAAGGCTACAGCTGGTGACACGCATCTTGGA 252005 Query 195974 GGTGAAGATTTCGA 195987 || || || || || Sbjct 252004 GGAGAGGACTTTGA 251991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657839777756720