Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq41 122 2e-22 seq152 86.0 1e-11 >seq41 Length=668564 Score = 122 bits (134), Expect = 2e-22 Identities = 169/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || |||| ||| ||||| || | ||||| || | |||||| |||||| Sbjct 25320 AATTTGCATGCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATT 25261 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || | || || | ||| || | ||| ||||| |||||||| | | || || Sbjct 25260 GTAATCCGCTAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTG 25201 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || || || || ||||| || |||| || | ||| ||| ||||| || Sbjct 25200 GTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGA 25141 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||||||| | ||| || || || || || || ||||| ||||| || ||||| Sbjct 25140 AGACTCAACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 >seq152 Length=376403 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | ||| || | |||||||| | || | ||| || || || || || Sbjct 331425 ATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCA 331484 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | ||| || | ||||| ||||||||||| | | |||||| || ||| Sbjct 331485 GCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGA 331544 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || ||||| || |||| || | || || || ||| ||||| Sbjct 331545 GGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCC 331604 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || ||||| ||||| || | ||||| ||||| |||||||| Sbjct 331605 ACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899623463134320