Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq152 96.9 7e-15 >seq152 Length=376403 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||||| ||| || | || ||||| | || | ||| || ||| ||||| |||| Sbjct 329360 ACCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGC 329419 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| ||||| || || ||||||||||| | | ||| || ||||| || Sbjct 329420 CAGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGG 329479 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || |||||||| || || || ||||| || | || || || || Sbjct 329480 GATACCCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAAC 329539 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||||||| || || || || || | ||| || ||||| Sbjct 329540 CTCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || | |||||| | || | ||| | ||| | |||||| || || |||||| Sbjct 331653 ATGCCGCCACGAAGACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCA 331712 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||| |||||| |||| ||||| || ||||||||||| || || | ||| ||||| ||| Sbjct 331713 GCTAAGGTTCGTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCCGGT 331772 Query 192427 GGTATTCCT 192435 || || ||| Sbjct 331773 GGGATCCCT 331781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984445299848850