Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq41 107 3e-18 >seq41 Length=668564 Score = 107 bits (118), Expect = 3e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 171861 ACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCC 171920 |||||||| | ||| | |||||| |||||| ||||| | || | ||| | || || Sbjct 25292 ACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCCTCA 25233 Query 171921 AATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGT 171980 | ||| || ||||||||||| | | || ||||| || || || || || || ||||| Sbjct 25232 AGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGA 25173 Query 171981 ATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 172040 || || || ||||| || |||||||| || || ||||| | ||| ||||| || Sbjct 25172 ATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTC 25113 Query 172041 CCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| | |||||| | || |||||||| Sbjct 25112 CCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905104874635800