Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq61 113 6e-19 seq337 93.3 5e-13 >seq61 Length=579265 Score = 113 bits (124), Expect = 6e-19 Identities = 170/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 1630081 GCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGACTCGCCGTTGGTGCCC 1630140 || ||||| || |||||||| ||||| || |||| || ||||| | |||||| || ||| Sbjct 233981 GCGGTGTCATTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTCGTTCCC 233922 Query 1630141 GCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGAC 1630200 | ||| || | || || | || || || || || || || || || ||| Sbjct 233921 CGGATGTAACTACCCACAGCTCGGATGTTATGGATGGAAAGCCCAATCCCTCCAGCAGAC 233862 Query 1630201 TTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCGATCGAGTCGGCCTTC 1630260 ||||| |||| || |||| || | ||||||||||| |||||||| ||| |||| Sbjct 233861 TTGGAAATGACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTGTCATTCTTC 233802 Query 1630261 ATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCGGCGTTGAAGAGCGTG 1630320 ||| | |||||||| || || |||||| | | ||||| ||||||||||||||| Sbjct 233801 ATGCAAATCAGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTGAAGAGCGTG 233742 Query 1630321 GG 1630322 || Sbjct 233741 GG 233740 Score = 113 bits (124), Expect = 6e-19 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1628499 CTCCTCCTTGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGG 1628558 |||||| |||||||| || ||| |||| || |||||||| | ||||| || ||||| || Sbjct 234604 CTCCTCTTTGCCGTGATTTTTTCTGAGATCCAGCCAGTCCATTATGTCTGCATGCCAGGG 234545 Query 1628559 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 |||||||||| ||||||||| || ||||||||||||||||| Sbjct 234544 CTCCAGGTAGATGGCAAAGGCACCTTTGCGCTTGCCGCCGCC 234503 >seq337 Length=177851 Score = 93.3 bits (102), Expect = 5e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 1574109 ACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGC 1574168 ||||||| ||| |||||||| ||| || || ||||| | ||| | || |||||| Sbjct 165979 ACGTCGGGGGCACAGCAGGCGCTGAGGAGGACGATGGAGATATACAGCGGGACAACGCGC 166038 Query 1574169 TTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGCGC 1574227 || |||||||| ||||||||||| || | |||||||||| || |||| || || ||||| Sbjct 166039 TTCGCCCTGGCCTGCAACACGTCCTCCAAGGTCATCGAGCCCATCCAGAGCCGATGCGC 166097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106913440057067