Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq152 150 2e-31 seq41 145 7e-30 >seq152 Length=376403 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| | ||||| | |||||||| ||||||||| | ||||| || ||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| || || || |||||||| ||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || |||||||| ||||||||||||||| | | || | ||||| ||| Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || || |||| ||||| ||||| || ||| Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGGC 331427 >seq41 Length=668564 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||| |||||| | || || || || || || || || || || ||||| || ||| Sbjct 27143 GATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAG 27202 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || ||||||||| ||||| || || || || || || || Sbjct 27203 CGACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 27262 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||||||||||| |||||||||||| | | | || |||| ||||| Sbjct 27263 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 27322 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || || ||||| |||| |||||||||| Sbjct 27323 CATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGG 27370 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| || || || || | | | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || |||| ||| | ||||||||| ||||| || || || || || || || Sbjct 28363 GACACCATCGACAACGTTAAGGC-AAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCA 28421 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||||| ||||| |||||||||||| | | | || |||| ||||| Sbjct 28422 GCAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAA 28481 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| ||||| || || ||||| |||| |||||||||| Sbjct 28482 CATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTCTGCGCGGAGG 28529 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || ||||| || || || || || || || || || || ||| Sbjct 29797 GATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAG 29856 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || |||||| || ||||| ||||| || || || || || Sbjct 29857 CGACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCA 29916 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || || |||||||||||||||| |||||||||||| | | | || | || ||||| Sbjct 29917 GCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAA 29976 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || |||||||| || || || |||||||||| Sbjct 29977 CATCCAGAAGGAATCTACCCTTCATCTGGTGTTGCG 30012 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || |||||||||||| | ||||| || || || || || || || | ||||| || | Sbjct 25081 ACCATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCT 25140 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | || || ||||| |||||||| || || || ||||| || Sbjct 25141 TCAGATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGAC 25200 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA-TGTCAGATTA 24879 || ||||| | || ||||| || || || || ||||| | || ||| | | ||||| Sbjct 25201 CAGCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGA-TGGACGCACACTAGCGGATTA 25259 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || |||||||| || ||||| || || || || | || ||||| |||||| Sbjct 25260 CAATATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGGC 25311 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || |||||||| || || || |||||||||| || || |||||||||||| | Sbjct 27017 AGGTATTCCTCCCGACCAGCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCG 27076 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || |||| || || || || ||||| |||||||| ||||||||| |||| |||| Sbjct 27077 CACCCTGGCAGACTACAATATCCAGAAGGAGTCGACACTCCACTTGGTGCTGCGTCTGCG 27136 Query 24925 CGGAGG 24930 || || Sbjct 27137 AGGTGG 27142 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || || || || || || || |||||||||||||||| |||||||||||| | Sbjct 29671 AGGCATCCCGCCAGACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCG 29730 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || |||| ||||| || || ||||| ||||| || || ||||| |||| |||| Sbjct 29731 CACCCTGGCAGACTATAATATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCG 29790 Query 24925 CGGAGG 24930 |||||| Sbjct 29791 CGGAGG 29796 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || |||||||| || || || ||||||||||| || || |||||||||||| | Sbjct 28176 AGGTATTCCTCCCGACCAGCAGCGGTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCG 28235 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || |||| || ||||| || ||||| || ||||| || ||||| |||| |||| Sbjct 28236 CACCCTGGCAGACTACAACATCCAGAAGGAGTCAACACTCCATCTGGTGCTGCGCCTGCG 28295 Query 24925 CGGAGG 24930 || || Sbjct 28296 AGGTGG 28301 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 24805 AGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAG 24864 ||| || ||||| ||||| || || | || ||||| || || || ||||||||| | Sbjct 25857 AGGCATCCCTCCGGATCAGCAGCGCCTCATTTTTGCAGGCAAGCAACTGGAGGATGGCCG 25916 Query 24865 AAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCG 24924 | | || |||| || ||||| || ||||| ||||| | || ||||||||||| ||||| Sbjct 25917 CACCTTGGCAGACTACAACATCCAGAAGGAGTCGACCTTGCATTTGGTGTTGCGGTTGCG 25976 Query 24925 CGGAGGC 24931 |||||| Sbjct 25977 TGGAGGC 25983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449882129146280