Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq61 107 3e-17 seq337 93.3 7e-13 >seq61 Length=579265 Score = 107 bits (118), Expect = 3e-17 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 2073556 GCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGACTCGCCGTTGGTGCCC 2073615 || ||||| || |||||||| ||||| || || | || ||||| | |||||| || ||| Sbjct 233981 GCGGTGTCATTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTCGTTCCC 233922 Query 2073616 GCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCGATGCCGCCGGCCGCC 2073675 | ||| ||| || || | || || || || || || || || || | | Sbjct 233921 CGGATGTAACTACCCACAGCTCGGATGTTATGGATGGAAAGCCCAATCCCTCCAGCAGAC 233862 Query 2073676 TTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCGATCGAGTCGGCCTTC 2073735 ||||| |||| || |||| |||| || |||||||| |||||||| ||| |||| Sbjct 233861 TTGGAAATGACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTGTCATTCTTC 233802 Query 2073736 ATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCGGCATTGAAGAGCGTG 2073795 ||| | ||||||||| || || |||||||| | ||||| || |||||||||||| Sbjct 233801 ATGCAAATCAGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTGAAGAGCGTG 233742 Query 2073796 GG 2073797 || Sbjct 233741 GG 233740 Score = 104 bits (114), Expect = 4e-16 Identities = 84/102 (82%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 2071911 CTCCTCCTTGCCGTGGTTCTTTTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGG 2071970 |||||| |||||||| || ||| | || || |||||||| | | ||| || ||||| || Sbjct 234604 CTCCTCTTTGCCGTGATTTTTTCTGAGATCCAGCCAGTCCATTATGTCTGCATGCCAGGG 234545 Query 2071971 CTCCAGGTAGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 2072012 |||||||||| ||||||||| || ||||||||||||||||| Sbjct 234544 CTCCAGGTAGATGGCAAAGGCACCTTTGCGCTTGCCGCCGCC 234503 >seq337 Length=177851 Score = 93.3 bits (102), Expect = 7e-13 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 2019246 ACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACACCAACACGACGCGG 2019305 ||||||| ||| |||||||| || | ||| ||||| | |||| | || ||||| Sbjct 165979 ACGTCGGGGGCACAGCAGGCGCTGAGGAGGACGATGGAGATATACAGCGGGACAACGCGC 166038 Query 2019306 TTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGC 2019364 || || ||||||||||||||||| || | ||||||||| || |||||||||| ||||| Sbjct 166039 TTCGCCCTGGCCTGCAACACGTCCTCCAAGGTCATCGAGCCCATCCAGAGCCGATGCGC 166097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915953763582689