Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq41 185 2e-41 seq152 132 9e-26 >seq41 Length=668564 Score = 185 bits (204), Expect = 2e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 ||||||| |||||| || ||||| |||||||| || ||||| || ||||| ||||| | | Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || ||||| ||||||||||| || || | ||| || |||||||| Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||||||||| || || ||||| ||||| ||||| || || ||| Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACT 25131 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || ||||| || |||| || || ||||| |||||||| Sbjct 25130 TCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Score = 136 bits (150), Expect = 8e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || |||| |||| || | || || |||||||| ||||| || ||||| |||| Sbjct 30025 ACCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGC 29966 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || || || || || |||||||| || | || || ||||| || Sbjct 29965 CAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGG 29906 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| || ||||||||||| || ||||| || || || || | | || || Sbjct 29905 GATGCCTTCCTTGTCCTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGAC 29846 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || ||||| ||||||| |||||| ||||| |||||||| Sbjct 29845 CTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| ||||||||||| || || || ||||| || || | | || || ||| Sbjct 27475 CCTTCCTTATCCTGAATCTTTGCCTTGACGTTGTCAATGGTGTCGCTGGACTCCACCTCC 27416 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || ||||| ||||||| ||||| ||||| |||||||| Sbjct 27415 AATGTGATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 27372 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| || ||||||||||| ||||| |||||||| ||| | | |||||||| Sbjct 25415 CCTTCCTTATCCTGGATCTTTGCTTTCACATTATCAATCGTGTCACTGGACTCTACTTCA 25356 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || ||||| || || | ||||| || || || ||||| Sbjct 25355 AGGGTAATTGTCTTCCCAGTAAGAGTCTTCACGAAAATTTGCAT 25312 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || |||||||||||||| ||||| |||||||| || | | || || ||| Sbjct 26087 CCTTCCTTGTCCTGAATCTTTGCTTTCACATTGTCAATCGTGTCGCTCGACTCAACCTCC 26028 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || || || | || || ||||| |||||||| Sbjct 26027 AAAGTAATAGTTTTTCCAGTAAGAGTTTTGACAAAAATCTGCAT 25984 >seq152 Length=376403 Score = 132 bits (146), Expect = 9e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||| | || || || || ||||| || || || || || || ||||| |||| Sbjct 329360 ACCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGC 329419 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || || || | || |||||||||||||| || | || || || ||||| Sbjct 329420 CAGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGG 329479 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || ||||||||||||||||| || || ||||| ||||| || ||| | | || || Sbjct 329480 GATACCCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAAC 329539 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || |||||||| ||||| ||||| || ||||| Sbjct 329540 CTCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | |||||||| ||| | || ||||| || || ||||| || || ||||||| Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || || || || ||||| || ||||| || || | ||||| || ||||| Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| ||||||||||| || || || || || || || || | | || ||| Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACT 331607 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || ||||| || || ||||| || ||||| Sbjct 331608 TCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 107 bits (118), Expect = 4e-18 Identities = 88/107 (82%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||||||||| |||||||| || || ||||| ||||| |||||| | | ||| ||| Sbjct 330789 ATACCTTCCTTATCCTGAATCTTCGCCTTGACATTGTCAATGGTATCACTTGATTCCACT 330848 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||||| || || || |||||||| ||||| ||||| |||||||| Sbjct 330849 TCTAAAGTGATAGTTTTCCCTGTCAATGTCTTGACAAAAATCTGCAT 330895 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||||||||| || || || ||||| ||||| || ||| | | ||| ||||| Sbjct 330004 CCTTCCTTATCTTGAATTTTGGCCTTGACATTATCAATGGTGTCACTTGATTCCACTTCT 330063 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || || |||||||| ||||| ||||| || ||||| Sbjct 330064 AACGTAATGGTTTTCCCTGTCAATGTCTTGACAAAAATTTGCAT 330107 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || ||||| || || || ||||| || ||||| |||||| | | ||||| || Sbjct 332331 CCTTCTTTGTCTTGGATTTTGGCCTTTACGTTGTCAATGGTATCACTCGACTCTACCTCT 332390 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || || |||||||| ||||||||||| |||||||| Sbjct 332391 AAAGTGATAGTTTTTCCTGTCAAAGTCTTTACAAAGATCTGCAT 332434 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||||||||| || ||||| ||||| ||||| || || |||||| | ||| |||||| Sbjct 331323 CCTTCCTTATCCTGGATCTTAGCTTTGACATTATCTATGGTATCAGAGGATTCCACTTCC 331382 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || |||||||| || | ||||| ||||| |||||||| Sbjct 331383 AGTGTAATGGTCTTGCCCGTGAGGGTCTTAACAAAAATCTGCAT 331426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981792593352589