Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq152 122 8e-23 seq61 118 1e-21 seq41 116 4e-21 >seq152 Length=376403 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || |||||||| ||| ||| | | | ||||| ||||| ||||| Sbjct 331458 GTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCA-TCCTCCAGCTGTTTGCC 331516 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| || ||||| ||||||||||||||||| |||||||| ||||| ||| Sbjct 331517 GGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGAATCTTGGCCTT 331576 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | |||||| ||| |||||| || | || | || || ||||||| ||| Sbjct 331577 CACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTACCGGTCAAAGT 331636 Query 133643 TTTTACGAAAATCTGCATG 133661 ||| || ||||| |||||| Sbjct 331637 TTTGACAAAAATTTGCATG 331655 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | |||||||| || || || || || || ||| || | ||||| | | Sbjct 329382 AAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTCCAAC 329441 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 ||||| || || | || || ||||||||||| |||||||| || ||||| || ||| Sbjct 329442 TGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTGAATC 329501 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 || ||||| | |||| ||||| | | ||| || || | || | |||||| || Sbjct 329502 TTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTTCCCT 329561 Query 133635 GTCAGAGTTTTTACGAAAATCTGCATG 133661 |||| ||| || || || || |||||| Sbjct 329562 GTCAAAGTCTTGACAAAGATTTGCATG 329588 >seq61 Length=579265 Score = 118 bits (130), Expect = 1e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 148821 GCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCG 148880 || || ||||| || |||||||| |||||||| |||| | ||||||| || || || Sbjct 235863 GCAATGGAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACGTGTACTCCACTATTTCA 235804 Query 148881 GCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCAC 148940 | |||||| ||| ||| ||| ||||| ||||| || ||| ||||| |||||| Sbjct 235803 GTGCACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCAT 235744 Query 148941 GCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 | ||||||||||||||||||||| || ||||||||||||| Sbjct 235743 GTGTCCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTGCG 235701 >seq41 Length=668564 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || || || || ||| ||| | | | ||||| |||||||| || Sbjct 27340 GTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTCCC 27282 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || ||||||||||| || |||||||| |||||||| ||||||| ||| Sbjct 27281 GGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCTTTGCCTT 27222 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| ||| |||||| || | ||||| ||| || || ||||| || Sbjct 27221 GACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGGTCTTCCCTGTCAGGGT 27162 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || || ||||| Sbjct 27161 CTTGACAAAGATTTGCAT 27144 Score = 114 bits (126), Expect = 1e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || || || || ||| ||| | | | ||||| |||| Sbjct 30001 ATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCA-TCCTCCAGCT 29943 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || || | || || ||||||||||| || ||||||||||||||||| |||| Sbjct 29942 GCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCT 29883 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||||| | || | |||||| ||| ||| || || | ||||| ||| || || | Sbjct 29882 TTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTCCCTG 29823 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 29822 TCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || || || || ||| ||| | | | ||||| |||| Sbjct 28506 ATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCA-TCCTCCAGCT 28448 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| ||||| | || || ||||||||||| || |||||||| |||||||| ||||| Sbjct 28447 GCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTGGATCT 28388 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | || | |||||| | | ||| || || | ||| | ||| || || | Sbjct 28387 TTGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGACCTCCAGGGTAATGGTCTTCCCTG 28328 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || || |||||||| Sbjct 28327 TCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 104 bits (114), Expect = 2e-17 Identities = 150/209 (72%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || |||||||| || ||||||||||| | | ||| | | | ||||| || Sbjct 25289 AAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCA-TCCTCAAG 25231 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || || ||||||| || |||||||| ||||| || || |||||||| || Sbjct 25230 TTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAAT 25171 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | |||| || || | | ||| || || | |||| ||| || || Sbjct 25170 CTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTCCC 25111 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATGG 133662 ||||| ||||| || || |||||||||| Sbjct 25110 AGTCAGTGTTTTCACAAAGATCTGCATGG 25082 Score = 82.4 bits (90), Expect = 7e-11 Identities = 78/97 (80%), Gaps = 2/97 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| |||||||| || ||| ||| | | | ||||| ||||||||||| Sbjct 27112 GTCGACTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGGCCA-TCCTCCAGCTGCTTGCC 27054 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCT 133559 ||| | || |||||||||||||||||||| || ||| Sbjct 27053 CGCAAAGATCAGCCGCTGCTGGTCGGGAGGAATACCT 27017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483404176367240