Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq152 118 7e-22 seq41 118 7e-22 >seq152 Length=376403 Score = 118 bits (130), Expect = 7e-22 Identities = 170/239 (71%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | |||||| || |||| ||| ||||| ||| || || ||| Sbjct 331416 AAAATCTGCATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATG 331475 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | || || || | || |||| ||||| ||||||||||| | |||||| Sbjct 331476 TTGTAATCAGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGT 331535 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCG 33690 || || | || | || || ||||| ||| || |||| || | ||||||| Sbjct 331536 TGGTCGGGAGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCG 331595 Query 33691 CTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || ||||| || | ||| || || ||||| || || ||||| ||||| || ||||| Sbjct 331596 CTGGACTCCACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 86.0 bits (94), Expect = 4e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||| ||| |||||| |||||| || ||||||||||| | | || ||| | Sbjct 331667 ACGGAGCACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCGTCC 331726 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 || ||||| || || || ||||||||||| ||||||||||| Sbjct 331727 ATCTTCCAACTGCTTACCAGCAAAAATCAACCGCTGCTGATC 331768 >seq41 Length=668564 Score = 118 bits (130), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || |||| || ||||||| ||| || || || || || ||||| || || | Sbjct 30025 ACCCCCCCTCAGGCGCAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGC 29966 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || |||||||| |||| |||||||| ||| |||| Sbjct 29965 CAGGGTGCGGCCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGG 29906 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| ||| || || | |||| ||| | ||||||||| || || | Sbjct 29905 GATGCCTTCCTTGTCCTGAATCTT-TGCCTTGACATTGTCGATGGTGTCGCTGGACTCGA 29847 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || ||||| | ||| || |||||||||||||| Sbjct 29846 CCTCCAGGGTGATGGTCTTCCCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 113 bits (124), Expect = 3e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || |||| |||||| | || ||||| ||||| ||||||||| || |||||||| | Sbjct 25310 CCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCT 25251 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||||||| | || || | ||| ||||| |||||||| | || ||||| ||| | || Sbjct 25250 AGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGA 25191 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||| || ||||| ||| || |||| ||| |||| || || || || || Sbjct 25190 ATACCCTCCTTGTCTTGAATCTTGGCCTTCA-CATTGTCAATTGTATCTGAAGACTCAAC 25132 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| || || || || | ||||| |||||||||||||| || Sbjct 25131 TTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATGGT 25081 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || | || ||| | ||||| ||| || || ||| || || ||||| || || | Sbjct 28529 CCTCCGCGCAGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCC 28470 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| |||||||| ||| |||| Sbjct 28469 AGGGTGCGGCCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGG 28410 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | ||| | ||| | ||||||||| || || || Sbjct 28409 ATGCCCTCCTTGTCCTGGATCTT-TGCCTTAACGTTGTCGATGGTGTCGCTCGACTCGAC 28351 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | || || || || ||||| | || || ||||||||||||||| Sbjct 28350 CTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCATA 28302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692979273920