Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq152 107 5e-18 seq41 95.1 3e-14 >seq152 Length=376403 Score = 107 bits (118), Expect = 5e-18 Identities = 150/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTG--ACACA 206235 ||||| |||||| | || || || || || || ||||||||||| || | | |||| Sbjct 331646 TTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGA--GTCCAGCGACACC 331589 Query 206236 GTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGA 206295 |||| || ||| ||||||||||| || || || || || ||| || | Sbjct 331588 ATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAACAGCGT 331529 Query 206296 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 206355 ||||| || ||||| || ||| |||| ||||| |||| |||| ||||||||| ||||| Sbjct 331528 CTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAACATCCAG 331469 Query 206356 AAAGAGTCTACTCTTCACCTTGTTTTG 206382 || ||||| |||||||| || |||||| Sbjct 331468 AAGGAGTCGACTCTTCATCTGGTTTTG 331442 >seq41 Length=668564 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || || || || |||||||||||||| || ||| || Sbjct 25087 CAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCAGAT 25146 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| ||||||||||| || || || ||| || ||| ||| Sbjct 25147 ACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAGCAA 25206 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || || || || |||||||| | || |||||| | || | || |||||||| | Sbjct 25207 CGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAATATT 25266 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || |||||||| ||||| || Sbjct 25267 CAAAAAGAGTCGACTCTGCA 25286 Score = 84.2 bits (92), Expect = 5e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 204760 CAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATC 204819 ||| || || ||||| ||||| || ||||||| ||||||||||||| || | ||||| Sbjct 30010 CAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATC 29951 Query 204820 TTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 ||||||||||| ||||| ||||| || || || || Sbjct 29950 CTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTG 29915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181779144140671