Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq152 114 1e-20 seq61 86.0 6e-12 >seq152 Length=376403 Score = 114 bits (126), Expect = 1e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 |||||| |||||||||| ||| | | ||||| || || |||||||| || || || Sbjct 331433 ACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGT 331492 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || |||||||| |||| | | || ||||||||||| || ||||| ||||| Sbjct 331493 CCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCC 331552 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || ||| || |||| | || | || ||| | | ||||||||| | Sbjct 331553 CTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAA 331612 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||| | || ||||| |||| |||||| | ||||| |||||| Sbjct 331613 CGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||||||||| ||||||| || ||||||||||||||| || ||| Sbjct 332441 ACGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGT 332500 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||||||||| | | || || || ||||| || || || || || Sbjct 332501 CCGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGGTGGAATCCC 332560 Query 132022 T 132022 | Sbjct 332561 T 332561 >seq61 Length=579265 Score = 86.0 bits (94), Expect = 6e-12 Identities = 119/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGC-GTCGCTGTACTGCACGATTTC 147518 || || || ||||| ||||| || |||||||| || || | || |||||| ||| ||||| Sbjct 235863 GCAATGGAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACG-TGTACTCCACTATTTC 235805 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCA 147578 | |||||||||| ||| ||| |||| || ||||| ||| || || ||||| Sbjct 235804 AGTGCACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCA 235745 Query 147579 CGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 | ||| ||| | ||||||||||| ||||| || || |||| Sbjct 235744 TGTGTCCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTGCG 235701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476594810532360