Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq41 87.8 2e-12 >seq41 Length=668564 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 || |||||| | ||||| |||||| | || || || | ||||| | ||||| || | Sbjct 25080 CACCATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTC 25139 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 ||||| || || | || || || ||| || || |||||||| || || || Sbjct 25140 TTCAGATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGA 25199 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCG-ATT 25349 |||||| | ||||||| | || || ||||| || |||| | | | |||| ||| Sbjct 25200 CCAGCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACT-AGCGGATT 25258 Query 25350 ACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||||||||| || || | |||||||| | | ||| ||||||| Sbjct 25259 ACAATATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGG 25310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445079094316320