Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq61 107 3e-17 >seq61 Length=579265 Score = 107 bits (118), Expect = 3e-17 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 259925 CCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGAC 259984 ||||||||||| || || ||||| || ||||||||| || || ||||||||| | | Sbjct 233740 CCCACGCTCTTCAACGCTGGCACTCCCCGCCCGCAGCTGTCCTCCTGCTTTCTGATTTGC 233799 Query 259985 ATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCC 260044 |||||| || |||||||| ||||| ||||| | ||| |||| || |||| ||| Sbjct 233800 ATGAAGAATGACAGCATCGAGGGTATCTACGACACCTTGAAGGAGTGTGCCGTCATTTCC 233859 Query 260045 AAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTG 260104 ||| | || || || || || || || || || | || || | ||| ||| | Sbjct 233860 AAGTCTGCTGGAGGGATTGGGCTTTCCATCCATAACATCCGAGCTGTGGGTAGTTACATC 233919 Query 260105 GCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACG 260164 ||| || |||||| | ||||| || | || || ||||| ||||| || || ||||| Sbjct 233920 CGGGGAACGAACGGCAACTCCAATGGGATCGTTCCTATGCTGCGCGTCTTCAATGACACC 233979 Query 260165 GC 260166 || Sbjct 233980 GC 233981 Score = 100 bits (110), Expect = 4e-15 Identities = 79/95 (83%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 ||||||||||||||||| || ||||||||| ||||||||| || ||||| || ||| | Sbjct 234503 GGCGGCGGCAAGCGCAAAGGTGCCTTTGCCATCTACCTGGAGCCCTGGCATGCAGACATA 234562 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAA 261882 || |||||||||| |||| ||| || |||||||| Sbjct 234563 ATGGACTGGCTGGATCTCAGAAAAAATCACGGCAA 234597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177545860993662