Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq152 140 3e-28 seq41 136 4e-27 >seq152 Length=376403 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| || | ||| |||| ||| | || |||||| || ||||||||||| ||| Sbjct 331428 CCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 331487 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || ||||| || | ||||| ||||| | ||| Sbjct 331488 AGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGG 331547 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||||||| ||||| ||||| | | | |||||||| || ||||| Sbjct 331548 ATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACT 331607 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||| || || ||||| ||||||||||| ||||| || ||||| Sbjct 331608 TCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || ||||||||| ||||| || || |||| ||| ||| | || || Sbjct 329378 CACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTCCGCCCATCCTC 329437 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || ||||| || | ||||||||||| | ||| | | |||||| || Sbjct 329438 CAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCCTCCTTATCTTG 329497 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 ||||| ||| | | | | | ||||| || || || ||||| | || || ||||| Sbjct 329498 AATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAACCTCAAGAGTAATGGTTTT 329557 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || |||||||| || ||||| || ||||| Sbjct 329558 CCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 102 bits (112), Expect = 7e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | || |||||||||||| || |||||| ||||||||||| |||||| Sbjct 332436 CCACCACGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGCC 332495 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 ||||| || | || |||||||| ||||| || || |||| || || ||||||| ||| Sbjct 332496 AAGGTCCGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGGTGGA 332555 Query 35630 A 35630 | Sbjct 332556 A 332556 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | || ||||| || |||||||| || ||| Sbjct 330109 CCACCACGCAGACGCAAAACCAAATGGAGTGTTGATTCCTTCTGGATGTTGTAGTCAGCC 330168 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||||| || | || |||| |||||| ||||||||||||| |||||||| |||| ||| Sbjct 330169 AAGGTACGGCCATCTTCCAACTGCTTGCCCGCAAATATCAGGCGCTGCTGATCCGGAGG 330227 Score = 91.5 bits (100), Expect = 1e-13 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||| ||| | || ||| || |||||||||||||| || |||||||| | || || Sbjct 331673 CACCAGATGGAGAGTGGACTCTTTCTGAATGTTGTAATCAGCTAAGGTTCGTCCATCTTC 331732 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCG 35624 || ||||||||| ||||| |||||||||||||| |||| Sbjct 331733 CAACTGCTTACCAGCAAAAATCAACCGCTGCTGATCCG 331770 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | ||| |||||||| | ||| |||||||| || ||||| || ||| Sbjct 329589 CCACCACGCAGACGCAAAACCAAATGGAGCGTTGATTCCTTTTGGATATTGTAGTCAGCC 329648 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||||| | || |||| ||||| || ||||| ||||| ||||||||||||| ||| Sbjct 329649 AGAGTTCGGCCATCTTCCAATTGCTTGCCAGCAAAAATCAAGCGCTGCTGGTCCGGCGGA 329708 Query 35630 ACGC 35633 | || Sbjct 329709 ATGC 329712 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | |||||||| || | ||| |||||||||||||||||| || || Sbjct 330897 CCACCACGGAGACGCAACACCAGGTGGAGCGTTGACTCCTTTTGAATGTTGTAGTCTGCA 330956 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 | || || | || |||| |||||| || ||||| |||| ||||||||||| Sbjct 330957 AGAGTGCGGCCATCCTCCAACTGCTTTCCAGCAAAAATCAGGCGCTGCTGGTC 331009 >seq41 Length=668564 Score = 136 bits (150), Expect = 4e-27 Identities = 160/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || |||||| || ||||| || || |||| ||| || | || Sbjct 28515 CAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATC 28456 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| |||||||| |||| ||||||||||| | || | || ||||||||| Sbjct 28455 CTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 28396 Query 35644 CATGATCTTTTGCTTCAGAGTTGCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||||||| ||| | |||| | | ||||||||||| || ||||||| || || | Sbjct 28395 CTGGATCTTTGCCTTAAC-GTTGTCGATGGTGTCGCTCGACTCGACCTCCAGGGTAATGG 28337 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || |||| || || ||||| |||||||| Sbjct 28336 TCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 131 bits (144), Expect = 2e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | ||| |||||| || ||||| || || |||| ||| || | || Sbjct 27356 CAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATC 27297 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| ||||||||||| | || | || ||||||||| Sbjct 27296 CTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTC 27237 Query 35644 CATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCG 35702 | ||||||| ||| | |||| | | |||||||| || ||||| |||| ||||| | Sbjct 27236 CTGGATCTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGG 27178 Query 35703 TTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || || |||| || || ||||| || ||||| Sbjct 27177 TCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 131 bits (144), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 |||||||| ||| | ||| ||||| || ||||| || || |||| ||| || | || Sbjct 30010 CAACACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATC 29951 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| ||||||||||| | || | || |||||||| Sbjct 29950 CTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTC 29891 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 | |||||| ||| | | | | | |||||||| || || ||||||| ||||| || Sbjct 29890 CTGAATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGT 29831 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT-TCTGTGCGCACACACACCAC 35756 || || |||| || || ||||| |||||||| || ||||| || || ||| Sbjct 29830 CTTCCCTGTCAGCGTCTTGACAAAGATCTGCATCCCTCCGCGCAGACGCAGCAC 29777 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| |||||||| |||||||| || | || || | || || || ||||| || ||||| Sbjct 25275 CTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAA 25216 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | ||||| | ||||||||| ||||| ||||| | | Sbjct 25215 AATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACATT 25156 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || || || || || |||| ||||| || || || |||| |||||||| Sbjct 25155 GTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCAC 25096 Query 35725 AAATATCTGCATTCTGTGCGC-ACACACACC 35754 ||| |||||||| || || ||||||||| Sbjct 25095 AAAGATCTGCATGGTGGCTGCAACACACACC 25065 Score = 98.7 bits (108), Expect = 9e-16 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| |||| |||||||||||| || || |||||| || |||||||| || ||| Sbjct 25982 CCTCCACGCAACCGCAACACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAGTCTGCC 25923 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGG 35628 ||||| || | || ||||| ||||| || ||||| || | |||||||| |||| ||| Sbjct 25922 AAGGTGCGGCCATCCTCCAGTTGCTTGCCTGCAAAAATGAGGCGCTGCTGATCCGGAGG 25864 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | || |||||| || |||||||| || ||| Sbjct 28301 CCACCTCGCAGGCGCAGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCC 28242 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| |||||||| ||||||||||||||||| | |||| Sbjct 28241 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGGA 28182 Query 35630 A 35630 | Sbjct 28181 A 28181 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || |||||| || | || |||||| || || ||||| || ||| Sbjct 27142 CCACCTCGCAGACGCAGCACCAAGTGGAGTGTCGACTCCTTCTGGATATTGTAGTCTGCC 27083 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | ||| || | || ||||||||||| |||||||| |||| |||||||||||| | |||| Sbjct 27082 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCGGGAGGA 27023 Query 35630 A 35630 | Sbjct 27022 A 27022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450778098335080