Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq12 87.8 2e-12 seq421 84.2 2e-11 >seq12 Length=902100 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 161129 ATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGTGCT 161188 ||| | ||||| || |||||| | ||| | || || || ||| ||||||||| Sbjct 543437 ATTCTGGATGCTGCGGAAGAGTCTGGACTGGAACTTCCCTTCAGTTGCAAGGCTGGTGCT 543378 Query 161189 TGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCCTTC 161248 ||||| || ||||| || || | ||| |||| ||||| |||||| | | || || || Sbjct 543377 TGCTCGTCATGTGCTGGGAAGCTCATTGCAGGCACAGTGGACCAGACAGGGCAATCATTT 543318 Query 161249 TTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCTACTAGC 161308 | ||||| | |||||||| ||||||| || |||| ||||| ||| | || || ||| Sbjct 543317 CTTGATGAGAAACAGATTGAGAATGGATTCATTCTGACTTGTGTCGCAAAACCAAC-AGC 543259 Query 161309 -GATTGTGTGATTCAAACTGAGCAAGA 161334 || ||| |||| || || ||||| Sbjct 543258 TGACTGTACAATTCTCACGGAACAAGA 543232 >seq421 Length=131632 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 161898 ATGGGTCATTCTCTTCTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCCGCTGG 161957 ||||| ||||| | |||||||| ||||||||||| |||||||| || || |||||| Sbjct 167 ATGGGCCATTCATTGCTTCTTCTTTGGGGTCCTGAAGCTCAAGGAGACTTTACACGCTGG 226 Query 161958 GTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGGTGC 162001 || ||||| || || |||| |||||| |||||||| || || Sbjct 227 TGTCAGCTTGGTGGTCTTTGGACTTTTGTAGCACTCCACGGAGC 270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559484760056200