Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq126 95.1 1e-14 seq188 89.7 6e-13 >seq126 Length=422855 Score = 95.1 bits (104), Expect = 1e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 94854 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 94913 ||||||| | |||| |||||| |||||||| |||||||||| |||||| ||||||||| Sbjct 387364 CTTCTGCTCAATTTTTTGGCTGAAGAAGCGTGGTCTCATGCATGGTCTCACCTTCTCCAA 387423 Query 94914 CGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| | || || || |||||||| || ||| || ||||| Sbjct 387424 CGAGTTGATATCGCGGGACGAGGGCCTTCACTGCGATTTTGC 387465 >seq188 Length=330512 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 9611 TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCT 9670 || || ||||||||||| |||| | ||||| || || || ||||| |||||||| || Sbjct 30682 TCGAACCCATCCATCTCAGTCAGCAACTGGTTGATGGTCTGCTCCCGCTCATCATTGCCT 30741 Query 9671 GGCATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 9728 | | ||| ||||||| ||| || ||| || |||||||||||||||||||| || | Sbjct 30742 --CCTCCCATGCCAGCACCGCGCTGACGTCCGACAGCATCAATCTCATCAATGAAAACAA 30799 Query 9729 TGCATGG 9735 |||| || Sbjct 30800 TGCAGGG 30806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583240743119240