Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq41 185 3e-41 seq152 141 3e-28 seq183 113 1e-19 seq127 95.1 4e-14 seq399 87.8 5e-12 seq322 87.8 5e-12 seq141 87.8 5e-12 seq22 84.2 7e-11 >seq41 Length=668564 Score = 185 bits (204), Expect = 3e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| || || || || | || || | ||| ||||| ||||||||||||||||| | Sbjct 25318 TTTGCATGCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGT 25259 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 |||| | || ||| || ||||| |||||||| ||||||||||| || || |||||||| | Sbjct 25258 AATCCGCTAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGT 25199 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || || ||||| || || || ||||| ||||| | ||| || | Sbjct 25198 CTGGAGGAATACCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAG 25139 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||||||| | || | ||||| || || |||||||| ||||| |||||||| Sbjct 25138 ACTCAACTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| |||||||| || || ||||| ||||||||||||| ||| | || |||||| Sbjct 25415 CCTTCCTTATCCTGGATCTTTGCTTTCACATTATCAATCGTGTCACTGGACTCTACTTCA 25356 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || |||| |||||| || || || || || || ||||| ||||| Sbjct 25355 AGGGTAATTGTCTTCCCAGTAAGAGTCTTCACGAAAATTTGCAT 25312 >seq152 Length=376403 Score = 141 bits (156), Expect = 3e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 |||||| || | | || || | ||| || || ||||| ||||| || ||||| |||| Sbjct 329360 ACCACCTCGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGC 329419 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || |||||||| || | || |||||||||||||| ||||| ||||| |||||||| Sbjct 329420 CAGGGTCCGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGG 329479 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || ||||| ||||| || || || ||||| ||||| | ||| || ||||| Sbjct 329480 GATACCCTCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTTGACTCAAC 329539 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| |||| || || || || | || || ||||| || ||||| Sbjct 329540 CTCAAGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 136 bits (150), Expect = 1e-26 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| || | | ||| ||||||||||| ||||| || || || || ||||| Sbjct 331424 CATGCCACCACGCAAACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATC 331483 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || ||||| || ||||| || ||||| || || || || Sbjct 331484 AGCCAGCGTCCGGCCATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGG 331543 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TT 140685 ||| || || || || || ||||| || || || || ||||| || | || | ||| | Sbjct 331544 AGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTCACGTTATCGATGGTGTC-GCTGGACT 331602 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | ||||| | |||| ||||| ||||| | ||||| |||||||| ||||| Sbjct 331603 CCACTTCCAACGTAATAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| |||||||| || |||||||| |||||||| || | |||||| | ||| ||||| Sbjct 331323 CCTTCCTTATCCTGGATCTTAGCTTTGACATTATCTATGGTATCAGAGGATTCCACTTCC 331382 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||||| ||||| || || || || || |||||||||||||| Sbjct 331383 AGTGTAATGGTCTTGCCCGTGAGGGTCTTAACAAAAATCTGCAT 331426 >seq183 Length=335858 Score = 113 bits (124), Expect = 1e-19 Identities = 104/132 (79%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 || || || ||||| ||||||||||| || ||||| || || || ||| |||||||||| Sbjct 252106 CTCATCTTCGATTTGGGTGGTGGTACGTTCGATGTGTCCCTGCTGACAATTGAAGAGGGC 252047 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 ||||| || || || || || |||||||| || |||||||| ||||| || ||||| || Sbjct 252046 ATTTTCGAGGTGAAGGCTACAGCTGGTGACACGCATCTTGGAGGAGAGGACTTTGACAAC 251987 Query 349892 CGTCTCGTTTCG 349903 || || ||| || Sbjct 251986 CGGCTGGTTACG 251975 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 349229 TCTTGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAAC 349288 |||||||| | || ||||| |||||||| || || || ||| | ||||| || || Sbjct 253203 TCTTGTGTCGGCGTCTGGCAGAATGATCGCGTGGAGATCATTCCCAATGACATGGGAAAT 253144 Query 349289 AGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGATTCTGCA 349348 |||||||| || || |||||||||||||| || || || | | ||||||||| | ||| Sbjct 253143 AGAACAACACCGTCTTACGTTGCATTTACAGATACAGAAAGGCTTATTGGTGATGCAGCA 253084 Query 349349 AAAAATCA 349356 ||||| || Sbjct 253083 AAAAACCA 253076 >seq127 Length=421896 Score = 95.1 bits (104), Expect = 4e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 350189 GTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTT 350248 || ||||| ||||| ||||||||| |||||||| || ||| | || || || || || Sbjct 174016 GTCTTAGTGGGTGGAAGTACACGTATCCCAAAAGTACAGCAGCTTCTTTCAGACTTCTTC 173957 Query 350249 AATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCT 350308 ||||| | |||| || | || || || || ||||| |||||||||||||| |||||| Sbjct 173956 AATGGGAGAGAATTGTCGAAGTCCATCAACCCTGATGAGGCTGTTGCATATGGAGCTGCT 173897 Query 350309 GTTCAGG 350315 || |||| Sbjct 173896 GTGCAGG 173890 >seq399 Length=146742 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 94472 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACGGGGATCGATG 94413 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 94412 CCCCGCATCTCCA 94400 >seq322 Length=183864 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| |||||||||||| || |||||| | Sbjct 46866 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGCACGGGGATCGATG 46925 Query 235950 CCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 46926 CCCCGCATCTCCA 46938 >seq141 Length=398432 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | Sbjct 152571 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATG 152630 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 152631 CCCTGCTTCTCCA 152643 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||||||||| |||| ||||||| ||||||||| ||||||||||||||| |||||| | Sbjct 154299 GGGGATGTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACAGGGATCGATG 154358 Query 235950 CCCAGCATCTCCA 235962 ||| || |||||| Sbjct 154359 CCCTGCTTCTCCA 154371 >seq22 Length=829945 Score = 84.2 bits (92), Expect = 7e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 349666 TGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGC 349725 ||| |||| ||||||||| || ||||| | | || |||||||| |||||||||||||| Sbjct 653790 TGCAGGCACCATTGCGGGTTTGAATGTGGTGCGCATCATTAATGAGCCCACTGCTGCAGC 653849 Query 349726 AATTGCATATGGGCTTGATAAAATGAGTG 349754 |||||||| |||||||| || | | ||| Sbjct 653850 CATTGCATACGGGCTTGACAAGAAGGGTG 653878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515200991544053