Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq61 93.3 5e-14 seq126 86.0 7e-12 >seq61 Length=579265 Score = 93.3 bits (102), Expect = 5e-14 Identities = 197/294 (67%), Gaps = 0/294 (0%) Strand=Plus/Minus Query 79546 TACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTC 79605 |||| ||| |||| ||||| || || ||||| || ||||| || | || | ||||||| Sbjct 233987 TACCTGGCGGTGTCATTGAAGACGCGCAGCATAGGAACGATCCCATTGGAGTTGCCGTTC 233928 Query 79606 GTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCG 79665 || || ||| |||| || || ||||| | | | || || || || Sbjct 233927 GTTCCCCGGATGTAACTACCCACAGCTCGGATGTTATGGATGGAAAGCCCAATCCCTCCA 233868 Query 79666 GACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCG 79725 | ||||||| ||| || |||||||| | || |||||||| |||||||| ||| Sbjct 233867 GCAGACTTGGAAATGACGGCACACTCCTTCAAGGTGTCGTAGATACCCTCGATGCTGTCA 233808 Query 79726 TCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAG 79785 | |||||| | ||| |||||| |||| ||| ||| | || || ||||||||| Sbjct 233807 TTCTTCATGCAAATCAGAAAGCAGGAGGACAGCTGCGGGCGGGGAGTGCCAGCGTTGAAG 233748 Query 79786 AGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCC 79839 || || || | ||||| ||||| || | | | || ||| |||||||||| Sbjct 233747 AGCGTGGGGGATGCGTGTGTGAACCACCTCTCGGACAACAGCCGGTACGTCTCC 233694 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 78225 CTTCCATCCGTACAGGTGCATACTCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGAT 78284 |||||| |||| | ||||| || ||||||| | | | |||| |||| || Sbjct 238950 CTTCCAAGCGTAGAAGTGCAGGGACGTCAGCTTGCCGAAGTTGGGGTCGGACATGTGGAC 238891 Query 78285 GTTGAGCGACTGGGACTGGTCGATGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGA 78344 |||| |||||| |||||||||| | || |||||||| ||||||||||| | | | Sbjct 238890 ATTGAAGGACTGGCTCTGGTCGATGAAGGCGCCGCGGTCCGCCGCCATGTCCACCAGAGC 238831 Query 78345 CTTTTGCGGAATCTCCCAGATGGTCCGGTAAATGGCCTTCAGCTCTTCCTGGATGTCCAG 78404 | ||||| || ||||| | ||| ||| | |||||||||||||| |||||||||| Sbjct 238830 CCTTTGCTTTATTTCCCACACCGTCTTGTACAGCGCCTTCAGCTCTTCGGGGATGTCCAG 238771 Query 78405 C 78405 | Sbjct 238770 C 238770 Score = 89.7 bits (98), Expect = 6e-13 Identities = 115/157 (73%), Gaps = 4/157 (3%) Strand=Plus/Minus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCG--GGCTAGAAACCTCGATGATTTCTGTGC 79114 || |||||||||||||| |||||||| |||| | | | | ||| | ||||| |||| Sbjct 235857 GAGGCCAGGTTGCACACAGCCGTCTCCTCCGCAGACGTGTA--CTCCACTATTTCAGTGC 235800 Query 79115 ACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGT 79174 ||| || || | ||||||||| | ||||| ||||||| ||| ||| || | || Sbjct 235799 ACAGGTTGGAGCAGCGGATGGTGCCCAGGTTCTGCTGGTTGGACTTGCGGTTGCATGTGT 235740 Query 79175 CCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 ||||||| ||||||||| | ||||| || ||||| Sbjct 235739 CCTTGTACAGCATGTACGGGTTTCCGGTTTCCACCTG 235703 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79431 CATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCA 79490 || |||||| | ||| || || | || || || ||||||| ||||| || ||||| Sbjct 234607 CACCTCCTCTTTGCCGTGATTTTTTCTGAGATCCAGCCAGTCCATTATGTCTGCATGCCA 234548 Query 79491 CGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTG 79538 |||||||| |||||||| || | ||| |||||||||||||||||||| Sbjct 234547 GGGCTCCAGGTAGATGGCAAAGGCACCTTTGCGCTTGCCGCCGCCCTG 234500 Score = 82.4 bits (90), Expect = 8e-11 Identities = 123/171 (72%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 19793 CAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCAAAT 19852 ||||| || ||||| | ||||||||| ||||||||| | ||| |||||| || Sbjct 235703 CAGGTGGAAACCGGAAACCCGTACATGCTGTACAAGGACACATGCAACCGCAAGTCCAAC 235762 Query 19853 CAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTTTCC 19912 ||| ||||| | ||| | ||| | ||||||||||| |||||||| ||||| | | Sbjct 235763 CAGCAGAACCTGGGCACCATCCGCTGCTCCAACCTGTGCACTGAAATAGTGGAG---TAC 235819 Query 19913 AAG---CCGGACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGC-CTGCC 19959 | | |||| ||||| || ||||| || ||||| ||| | ||| ||||| Sbjct 235820 ACGTCTGCGGAGGAGACGGCTGTGTGCAACCTGGCCTCCAT-TGCACTGCC 235869 >seq126 Length=422855 Score = 86.0 bits (94), Expect = 7e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 60030 TTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAAC 60089 ||||| | ||||| ||||| || |||||||| ||||||| || || | ||||||||| Sbjct 387365 TTCTGCTCAATTTTTTGGCTGAAGAAGCGTGGTCTCATGCATGGTCTCACCTTCTCCAAC 387424 Query 60090 GAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCA 60131 ||| |||| || |||||||||||||| || || |||||| Sbjct 387425 GAGTTGATATCGCGGGACGAGGGCCTTCACTGCGATTTTGCA 387466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548505937603440