Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq61 98.7 1e-15 seq130 89.7 6e-13 >seq61 Length=579265 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 55091 TTATTTGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGG 55150 || ||||| ||||||||| | | || ||||| | || ||||| || |||||||||||| Sbjct 236391 TTCTTTGATTTTGACAAGTTGCGGGAGGTGACACACGTGGTGACCCGCAACCTGAACCGG 236450 Query 55151 GTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGG 55210 ||||||||| || |||||||| ||| | || ||| || ||||| |||||||| Sbjct 236451 ATCATCGACATCAACTACTACCCCGTCGAAACCGCTCGCCGCTCAAACCTTCGGCACCGC 236510 Query 55211 CCCATCGCCATCGGTGTACAGG 55232 || || | ||| ||||| |||| Sbjct 236511 CCGATTGGCATTGGTGTTCAGG 236532 >seq130 Length=415370 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 158966 CTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCACATGGCCT 159025 ||||||| |||| ||| |||| || || | ||| |||||||||||||||||| || Sbjct 251078 CTCCAGTGGCAACCACGTAGTCATCGGGCTTGTCCTGCTGGAGCATGAGCCACATGCACT 251019 Query 159026 CGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCC 159074 | ||||| || | || || |||||||||||||| ||||| ||||| || Sbjct 251018 CTACGTAGTCTCGTGCATGGCCCCAGTCGCGCTTCGCATCGATGTTGCC 250970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547197182609800