Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq152 212 7e-50 seq41 194 2e-44 >seq152 Length=376403 Score = 212 bits (234), Expect = 7e-50 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| | || || || || ||||||||||||||||||||| || Sbjct 329587 ATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAGT 329528 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||||| || ||||| || |||||||| || ||||| |||||| Sbjct 329527 GACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCAG 329468 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| | ||||||| || ||||| || |||||||| Sbjct 329467 CAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAAC 329408 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||||| ||||| || ||| | || | || ||||| ||||| Sbjct 329407 ATCCAAAAGGAGTCCACACTGCATTTGGTGCTCCGCCTTCGAGGTGG 329361 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| |||||||| || | ||||| ||||||||||| | || || ||||| | Sbjct 331654 ATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTCCAGC 331595 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || ||||| ||||||||||| || ||||| ||||| Sbjct 331594 GACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGACCAA 331535 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| |||||||| || || || || ||||||| || || || || || || || Sbjct 331534 CAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTACAAC 331475 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||||||||| || |||||| | || ||||| Sbjct 331474 ATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGG 331428 Score = 109 bits (120), Expect = 6e-19 Identities = 99/125 (79%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || ||||| || ||||||||||| | ||||||||||| |||||| | || |||| || Sbjct 329713 GGCATTCCGCCGGACCAGCAGCGCTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCCGA 329654 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || || ||||| ||| ||||||||||||| || || ||| | || |||||||| || Sbjct 329653 ACTCTGGCTGACTACAATATCCAAAAGGAATCAACGCTCCATTTGGTTTTGCGTCTGCGT 329594 Query 27628 GGTGG 27632 ||||| Sbjct 329593 GGTGG 329589 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || ||||||||||| || ||||||||||| ||||| | ||||||| || Sbjct 331021 GGTATCCCCCCTGACCAGCAGCGCCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGCCGC 330962 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || || |||||||| || | |||||||| || || || || || || |||||||| || Sbjct 330961 ACTCTTGCAGACTACAACATTCAAAAGGAGTCAACGCTCCACCTGGTGTTGCGTCTCCGT 330902 Query 27628 GGTGG 27632 ||||| Sbjct 330901 GGTGG 330897 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || || || |||||||| | ||||||||||||||||| | || |||| || Sbjct 331780 GGGATCCCACCGGATCAGCAGCGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGA 331721 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||| |||| || || || | || || || |||||||| ||||| || | |||||||| Sbjct 331720 ACCTTAGCTGATTACAACATTCAGAAAGAGTCCACTCTCCATCTGGTGCTCCGTCTTCGT 331661 Query 27628 GGTGG 27632 || || Sbjct 331660 GGCGG 331656 >seq41 Length=668564 Score = 194 bits (214), Expect = 2e-44 Identities = 179/227 (79%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || || || ||||| ||||| || ||||| ||||| | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || ||||||||| Sbjct 28363 GACACCATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 28422 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || ||||| ||||||||||| Sbjct 28423 CAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 28482 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || ||||||| ||||| || Sbjct 28483 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTCTGCGCGGAGG 28529 Score = 192 bits (212), Expect = 7e-44 Identities = 181/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||||||||||||||| || || ||||| || || || ||||| ||||| | Sbjct 29798 ATGCAGATCTTTGTCAAGACGCTGACAGGGAAGACCATCACCCTGGAGGTCGAGTCCAGC 29857 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || |||||||||||||| || || || ||||||||| Sbjct 29858 GACACCATCGACAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 29917 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || ||||| || |||||||| Sbjct 29918 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCTGACTATAAC 29977 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| |||||||| || |||||||| || ||||| || | || || ||| Sbjct 29978 ATCCAGAAGGAATCTACCCTTCATCTGGTGTTGCGCCTGAGGGGGGGTCAA 30028 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || || || ||||| || || || || || ||||| | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||||| || || |||||||||||||| || || ||||||||| Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 27263 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||||| || ||||| ||||||||||| Sbjct 27264 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 27323 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || ||||||| ||||| || Sbjct 27324 ATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGG 27370 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| || || || || || ||||| || ||| | || |||||||| Sbjct 25084 ATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTTCA 25143 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || ||||| ||||||||||| ||||||||||||||| Sbjct 25144 GATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACCAG 25203 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || || ||||||||||| |||||||| ||||||| || || ||||| || || ||| Sbjct 25204 CAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACAAT 25263 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| || || ||||| ||| ||||| | ||| | || || || Sbjct 25264 ATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGG 25310 Score = 118 bits (130), Expect = 1e-21 Identities = 101/125 (81%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || |||||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 29672 GGCATCCCGCCAGACCAGCAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGC 29731 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| |||||||||||| |||| ||||| || || |||||||| || ||||||| ||| Sbjct 29732 ACCCTGGCAGACTATAATATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGC 29791 Query 27628 GGTGG 27632 || || Sbjct 29792 GGAGG 29796 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || || || |||||||||||||| || ||||| ||||| ||||| | ||||||| || Sbjct 26564 GGCATCCCACCAGACCAGCAGCGGCTGATTTTCGCTGGCAAGCAGTTGGAGGATGGCCGC 26623 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 |||||||| ||||| ||| | |||||||| |||||||| || | || |||| || || Sbjct 26624 ACCCTAGCTGACTACAATATTCAAAAGGAGTCCACTCTGCACTTGGTGCTGCGCCTCCGG 26683 Query 27628 GGTGG 27632 ||||| Sbjct 26684 GGTGG 26688 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||||||||| || || ||||| || ||||| || ||||||| || Sbjct 27018 GGTATTCCTCCCGACCAGCAGCGGCTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 27077 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| |||||||| ||| |||| ||||| || || || || | || ||||||| || Sbjct 27078 ACCCTGGCAGACTACAATATCCAGAAGGAGTCGACACTCCACTTGGTGCTGCGTCTGCGA 27137 Query 27628 GGTGG 27632 ||||| Sbjct 27138 GGTGG 27142 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 || |||||||| ||||||||||| | || ||||| || ||||| || ||||||| || Sbjct 28177 GGTATTCCTCCCGACCAGCAGCGGTTGATCTTTGCGGGCAAGCAGCTGGAGGATGGCCGC 28236 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 ||||| |||||||| || |||| ||||| || || || ||||| || |||| || || Sbjct 28237 ACCCTGGCAGACTACAACATCCAGAAGGAGTCAACACTCCATCTGGTGCTGCGCCTGCGA 28296 Query 27628 GGTGG 27632 ||||| Sbjct 28297 GGTGG 28301 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || ||||| || || ||||||||| | ||||||||||| | Sbjct 25984 ATGCAGATTTTTGTCAAAACTCTTACTGGAAAAACTATTACTTTGGAGGTTGAGTCGAGC 26043 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| ||| |||| || || |||||||||||||| || Sbjct 26044 GACACGATTGACAATGTGAAAGCAAAGATTCAGGACAAGGAAGG 26087 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| ||||| | ||||||||||| || || | || || ||||| | Sbjct 26690 ATGCAAATCTTTGTTAAGACCTTGACCGGCAAGACCATCACATTGGAAGTGGAGTCCAGC 26749 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | |||| ||| |||| ||||| |||||||| |||||||| Sbjct 26750 GACACGATTGACAATGTGAAAGCTAAGATTCAGGATAAGGAGGG 26793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290788451120