Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq152 134 9e-27 seq41 109 3e-19 >seq152 Length=376403 Score = 134 bits (148), Expect = 9e-27 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 34491 ACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTC 34550 |||||| |||| ||| ||||| |||||| || ||||| ||||| | || || || | Sbjct 331439 ACGCAAAACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCC 331498 Query 34551 GTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTT 34610 || || || ||||| |||||||| || | |||||||||||| || || | |||||||| Sbjct 331499 ATCCTCCAGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTT 331558 Query 34611 GTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTA 34669 |||| ||| || | || ||| || || ||||| | ||||||||||| || | Sbjct 331559 GTCT-TGAATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAA 331617 Query 34670 TCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || |||||||| || ||||| |||||||| |||||| Sbjct 331618 TAGTCTTACCGGTCAAAGTTTTGACAAAAATTTGCATG 331655 Score = 82.4 bits (90), Expect = 5e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 |||||||| ||||||||||| || |||||||| || || || || | || ||||| Sbjct 329598 AGACGCAAAACCAAATGGAGCGTTGATTCCTTTTGGATATTGTAGTCAGCCAGAGTTCGG 329657 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 | ||||| | ||| || || ||||| || || ||||| ||||||||||| Sbjct 329658 CCATCTTCCAATTGCTTGCCAGCAAAAATCAAGCGCTGCTGGTCCGGCGG 329707 >seq41 Length=668564 Score = 109 bits (120), Expect = 3e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||| || || |||||| || |||||||| |||| || || || Sbjct 27361 AGACGCAGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGG 27302 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || |||||||| || | ||||| ||||| ||||| | |||||| Sbjct 27301 CCATCCTCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 27242 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| |||| || ||| | || ||||| | ||||||||||| ||| Sbjct 27241 TTGTCCTGGATC-TTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGT 27183 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || | || || ||||| || ||||| Sbjct 27182 GATGGTCTTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 104 bits (114), Expect = 1e-17 Identities = 158/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||| || || |||||| || |||||||| |||| || || || Sbjct 28520 AGACGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGG 28461 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || ||||| || | ||||| ||||| ||||| | |||||| Sbjct 28460 CCATCCTCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCC 28401 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGG 34666 ||||| |||| |||| |||||| | || ||||| ||| ||| || |||| || Sbjct 28400 TTGTCCTGGATC-TTTGCCTTAACGTTGTCGATGGTGTCGCTCG-ACTCGACCTCCAGGG 28343 Query 34667 TTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || || || || || | || || ||||| |||||||| Sbjct 28342 TAATGGTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 102 bits (112), Expect = 5e-17 Identities = 164/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| | ||| | || ||||| ||||| ||| |||||||| || ||||| | Sbjct 25311 GCCTCCTCGCAAACGAAGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGC 25252 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 ||||| || | || |||||||| || || ||||| || | || || ||||| || || Sbjct 25251 TAGTGTGCGTCCATCCTCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGG 25192 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| || | || || | |||||| ||| ||| | Sbjct 25191 AATACCCTCCTTGTCT-TGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAA 25133 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 |||||| || || || || || || | ||||||||||| ||||||||| || Sbjct 25132 CTTCCAAAGTGATGGTCTTCCCAGTCAGTGTTTTCACAAAGATCTGCATGGTG 25080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314719047804983