Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq152 165 7e-36 seq41 104 2e-17 >seq152 Length=376403 Score = 165 bits (182), Expect = 7e-36 Identities = 177/234 (76%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || |||||| || ||||| |||||| ||||||| ||| ||||||| | |||||||| | Sbjct 331658 CGGCATGCAAATTTTTGTCAAAACTTTGACCGGTAAGACTATTACGTTGGAAGTGGAGTC 331599 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 |||| | || || | || || || ||||||||||| || ||||| || ||||| Sbjct 331598 CAGCGACACCATCGATAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCTCCCGA 331539 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 ||||||||| | || | ||||||||||| |||| || | ||| | | ||||| Sbjct 331538 CCAACAGCGTCTTATTTTTGCCGGCAAACAGCTGGAGGATGGCCGGACGCTGGCTGATTA 331479 Query 27164 CAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||| || ||||||||||| | ||| |||||||||||||||| |||||||| Sbjct 331478 CAACATCCAGAAGGAGTCGACTCTTCATCTGGTTTTGCGTTTGCGTGGTGGCAT 331425 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||| || ||| |||| || || | ||||||||||| || || | Sbjct 329588 CATGCAAATCTTTGTCAAGACTTTGACAGGGAAAACCATTACTCTTGAGGTTGAGTCAAG 329529 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || |||||||| || || || || || || || || Sbjct 329528 TGACACCATTGACAATGTCAAGGCGAAGATTCAAGATAAGGAGGGTATCCCTCCTGACCA 329469 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || ||||| || | |||| | | || || || Sbjct 329468 GCAGCGTCTTATCTTTGCTGGAAAGCAGTTGGAGGATGGGCGGACCCTGGCTGACTATAA 329409 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| ||||||||||| || | |||||||| | || | || ||||| Sbjct 329408 CATCCAAAAGGAGTCCACACTGCATTTGGTGCTCCGCCTTCGAGGTGG 329361 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 ||| || ||||| || ||||| || | || | ||| || ||||| ||||||| | Sbjct 332561 AGGGATTCCACCGGACCAACAACGCCTGATTTTCGCTGGTAAACAGCTGGAAGATGGCCG 332502 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 |||| | |||| ||||||||||| |||||||| || ||||||||||| |||| | || Sbjct 332501 GACCTTGGCCGACTACAACATTCAGAAGGAGTCAACTTTACATTTGGTGCTGCGCCTTCG 332442 Query 27209 GGGTGGCAT 27217 |||||||| Sbjct 332441 TGGTGGCAT 332433 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27086 AGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAG 27145 || ||| || || || ||||| ||||| | |||| || ||||| || |||||||| | Sbjct 330237 AGTAGGGATCCCTCCGGATCAGCAGCGCCTGATATTTGCGGGCAAGCAGTTGGAAGATGG 330178 Query 27146 TTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTT 27205 ||| | | || |||||||| || ||||| || || | ||||||||||||||| | Sbjct 330177 CCGTACCTTGGCTGACTACAACATCCAGAAGGAATCAACACTCCATTTGGTTTTGCGTCT 330118 Query 27206 GCGGGGTGGCAT 27217 ||| |||||||| Sbjct 330117 GCGTGGTGGCAT 330106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || || || ||||| || || | || ||||| ||||||||||| | Sbjct 329714 AGGCATTCCGCCGGACCAGCAGCGCTTGATTTTTGCTGGCAAGCAATTGGAAGATGGCCG 329655 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 || | | || ||||| || |||||||| || || | ||||||||||||||| |||| Sbjct 329654 AACTCTGGCTGACTACAATATCCAAAAGGAATCAACGCTCCATTTGGTTTTGCGTCTGCG 329595 Query 27209 GGGTGGCAT 27217 |||||||| Sbjct 329594 TGGTGGCAT 329586 >seq41 Length=668564 Score = 104 bits (114), Expect = 2e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| ||||| ||||| ||||| || ||| | || ||| | ||||| || | | Sbjct 25082 CCATGCAGATCTTTGTGAAAACACTGACTGGGAAGACCATCACTTTGGAAGTTGAGTCTT 25141 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||| | || || || ||||||||||| || || || || || || | Sbjct 25142 CAGATACAATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGTATTCCTCCAGACC 25201 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | || || | || | || || || ||| | || || | || | | ||||||| Sbjct 25202 AGCAACGCCTCATTTTTGCTGGAAAGCAACTTGAGGATGGACGCACACTAGCGGATTACA 25261 Query 27166 ACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 | |||||||| |||||||| | ||||| || | |||||||| || ||||| Sbjct 25262 ATATTCAAAAAGAGTCGACTCTGCATTTAGTCCTTCGTTTGCGAGGAGGCAT 25313 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| | || || || |||||||| | | Sbjct 27144 ATGCAAATCTTTGTCAAGACCCTGACAGGGAAGACCATCACCCTGGAAGTGGAGTCCAGC 27203 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | ||||| ||| || || ||||| || ||||| || || || || Sbjct 27204 GACACCATCGACAACGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 27263 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||||| || || |||| || | ||| | | || || ||| Sbjct 27264 CAGCGCCTGATCTTTGCCGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 27323 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||||||||| | ||| |||| ||||| |||| || || || Sbjct 27324 ATCCAGAAGGAGTCGACGCTTCATCTGGTGCTGCGTCTGCGCGGAGGGAT 27373 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| | ||||| || || || || || | Sbjct 28303 ATGCAGATCTTTGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAGGTCGAGTCGAGC 28362 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||| || || ||||| || ||||| || || || || Sbjct 28363 GACACCATCGACAACGTTAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCAGACCAG 28422 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || |||| || | ||| | | || || ||| Sbjct 28423 CAGCGCCTGATCTTTGCGGGGAAGCAGCTGGAGGATGGCCGCACCCTGGCAGACTATAAC 28482 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | ||| |||| ||||| |||| || || || Sbjct 28483 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGTCTGCGCGGAGGGAT 28532 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 27089 AGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTC 27148 |||||| || || ||||| ||||| | || | || ||||| ||| |||| || | Sbjct 25857 AGGCATCCCTCCGGATCAGCAGCGCCTCATTTTTGCAGGCAAGCAACTGGAGGATGGCCG 25916 Query 27149 GACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCG 27208 ||| | | || |||||||| || |||||||||||||| |||||||| ||||| ||||| Sbjct 25917 CACCTTGGCAGACTACAACATCCAGAAGGAGTCGACCTTGCATTTGGTGTTGCGGTTGCG 25976 Query 27209 GGGTGGCAT 27217 || ||||| Sbjct 25977 TGGAGGCAT 25985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434903444243520