Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq41 91.5 1e-13 seq152 86.0 4e-12 >seq41 Length=668564 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| || | |||||||| || || ||| |||| || | |||| |||| | || Sbjct 25869 GGATCAGCAGCGCCTCATTTTTGCAGGCAAGCAACTGGAGGATGGCCGCACCTTGGCAGA 25928 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||||| || ||| || ||||||||||| ||||| |||||||| ||| Sbjct 25929 CTACAACATCCAGAAGGAGTCGACCTTGCATTTGGTGTTGCGGTTGCGTGGAGGC 25983 >seq152 Length=376403 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27903 GGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGA 27962 ||| ||||| ||||| |||||||| || || || ||||| || | ||| | ||| | || Sbjct 331769 GGATCAGCAGCGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGACGAACCTTAGCTGA 331710 Query 27963 TTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||||||||| || |||||| |||| | ||| |||| | ||| | ||||||||| Sbjct 331709 TTACAACATTCAGAAAGAGTCCACTCTCCATCTGGTGCTCCGTCTTCGTGGCGGC 331655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355850468712177