Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq41 159 8e-34 seq152 149 1e-30 >seq41 Length=668564 Score = 159 bits (176), Expect = 8e-34 Identities = 165/215 (77%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || ||||||||||| || || ||||| | ||||| Sbjct 28514 AGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCC 28455 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 28454 TCCAGCTGCTTCCCCGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 28395 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCT---TTCAACCTCGAGAGTGATC 211079 ||||||||| || ||||| ||||||||||| ||| || ||||| || || || Sbjct 28394 TGGATCTTTGCCTTAACGTTGTCGATGGTGTC---GCTCGACTCGACCTCCAGGGTAATG 28338 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || ||||| ||||| | |||||| Sbjct 28337 GTCTTCCCTGTCAGGGTCTTGACAAAGATCTGCAT 28303 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || ||||||||||| || || ||||| | ||||| Sbjct 27355 AGCACCAGATGAAGCGTCGACTCCTTCTGGATGTTATAGTCTGCCAGGGTGCGGCCATCC 27296 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| ||||| || ||||| || || | || ||||||||| Sbjct 27295 TCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCC 27236 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 ||||||||| || ||||| ||||||||||| | || || || || ||||| ||| Sbjct 27235 TGGATCTTTGCCTTGACGTTGTCGATGGTGTCGCTGGACTCCACTTCCAGGGTGATGGTC 27176 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | ||||| Sbjct 27175 TTCCCTGTCAGGGTCTTGACAAAGATTTGCAT 27144 Score = 156 bits (172), Expect = 1e-32 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || ||||| || || || || ||||||||||| || || ||||| | ||||| ||| Sbjct 30006 ACCAGATGAAGGGTAGATTCCTTCTGGATGTTATAGTCAGCCAGGGTGCGGCCATCCTCC 29947 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 |||||||| || || ||||| ||||| || ||||| || || | |||||||||||||| Sbjct 29946 AGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGA 29887 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 |||||| || || || ||||||||||| | || ||||| || ||||| ||||| Sbjct 29886 ATCTTTGCCTTGACATTGTCGATGGTGTCGCTGGACTCGACCTCCAGGGTGATGGTCTTC 29827 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| ||||| | |||||| Sbjct 29826 CCTGTCAGCGTCTTGACAAAGATCTGCAT 29798 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | || ||||| ||||||||||| || || |||||||| || || | |||||| Sbjct 25295 AGGACTAAATGCAGAGTCGACTCTTTTTGAATATTGTAATCCGCTAGTGTGCGTCCATCC 25236 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || || || || |||||||| ||||| ||||||| || |||||||| Sbjct 25235 TCAAGTTGCTTTCCAGCAAAAATGAGGCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCT 25176 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||| || || || || || || ||||| || | |||||| ||| Sbjct 25175 TGAATCTTGGCCTTCACATTGTCAATTGTATCTGAAGACTCAACTTCCAAAGTGATGGTC 25116 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || || || ||||| | |||||| Sbjct 25115 TTCCCAGTCAGTGTTTTCACAAAGATCTGCAT 25084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || ||||| || || || || ||||| | ||||| Sbjct 27127 AGCACCAAGTGGAGTGTCGACTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGGCCATCC 27068 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| || || || ||||| ||||||| Sbjct 27067 TCCAGCTGCTTGCCCGCAAAGATCAGCCGCTGCTGGTCGGGAGGAA 27022 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || || || || ||||| || |||||||| || || || ||||| | ||||| Sbjct 28286 AGCACCAGATGGAGTGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCC 28227 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 |||||||||||||| || ||||| | || || ||||| ||||||| Sbjct 28226 TCCAGCTGCTTGCCCGCAAAGATCAACCGCTGCTGGTCGGGAGGAA 28181 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || || ||||| || ||||| || ||||| ||||| || || ||||| | ||||| Sbjct 29781 AGCACCAGATGAAGCGTCGACTCCTTCTGGATATTATAGTCTGCCAGGGTGCGGCCATCC 29722 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGG 211006 ||||||||||| || || ||||| ||||| || ||||| || || Sbjct 29721 TCCAGCTGCTTCCCGGCAAAGATCAGGCGCTGCTGGTCTGGCGG 29678 >seq152 Length=376403 Score = 149 bits (164), Expect = 1e-30 Identities = 168/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||| | || || | || || |||||||| |||||||||||||| || || |||||| Sbjct 329367 CGAAGGCGGAGCACCAAATGCAGTGTGGACTCCTTTTGGATGTTATAGTCAGCCAGGGTC 329426 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| |||| |||||| || || |||||||| || || ||||||||||| | || Sbjct 329427 CGCCCATCCTCCAACTGCTTTCCAGCAAAGATAAGACGCTGCTGGTCAGGAGGGATACCC 329486 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCG 211070 ||||| || || ||||| || || || || ||||||||| ||| |||||||| Sbjct 329487 TCCTTATCTTGAATCTTCGCCTTGACATTGTCAATGGTGTCA---CTTGACTCAACCTCA 329543 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || || | |||||| ||||| | ||||| Sbjct 329544 AGAGTAATGGTTTTCCCTGTCAAAGTCTTGACAAAGATTTGCAT 329587 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 210906 ACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCC 210965 || || |||||||| ||||| || |||||||| ||||| || || |||| ||||| ||| Sbjct 331446 ACCAGATGAAGAGTCGACTCCTTCTGGATGTTGTAATCAGCCAGCGTCCGGCCATCCTCC 331505 Query 210966 AGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGG 211025 ||||| ||||| || || ||||| || |||||||| ||||| | || |||||||| || Sbjct 331506 AGCTGTTTGCCGGCAAAAATAAGACGCTGTTGGTCGGGAGGGATGCCCTCCTTGTCTTGA 331565 Query 211026 ATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTT 211085 ||||| |||||||| ||||||||||| | || || || | || || ||||| Sbjct 331566 ATCTTGGCCTTCACGTTATCGATGGTGTCGCTGGACTCCACTTCCAACGTAATAGTCTTA 331625 Query 211086 CCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || | ||| || ||||| | ||||| Sbjct 331626 CCGGTCAAAGTTTTGACAAAAATTTGCAT 331654 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 211011 CCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCG 211070 |||||||| ||||||||||| ||| || || || ||||| |||||| ||| || || Sbjct 331323 CCTTCCTTATCCTGGATCTTAGCTTTGACATTATCTATGGTATCAGAGGATTCCACTTCC 331382 Query 211071 AGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || ||||| |||||||| ||||| ||||| | |||||| Sbjct 331383 AGTGTAATGGTCTTGCCCGTGAGGGTCTTAACAAAAATCTGCAT 331426 Score = 87.8 bits (96), Expect = 4e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | || | ||| ||||| || || ||||| || || || | ||| Sbjct 332441 ACGAAGGCGCAGCACCAAATGTAAAGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAGGT 332500 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAA 211008 || |||||||||||||| || || ||||| || |||||||||||||| || |||| Sbjct 332501 CCGGCCATCTTCCAGCTGTTTACCAGCGAAAATCAGGCGTTGTTGGTCCGGTGGAA 332556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159111143152115